Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30066
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.8  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    25   8.9  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    25   8.9  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   8.9  

>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 50  NVHLTETQKEKAKQYTSECVKESGVSTEVINAAK 151
           N H++E  KE+A++Y  E   ES  +T      K
Sbjct: 17  NPHVSEEAKERARKYLKEHGSESHYTTGTTRGQK 50


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 216 ADLLKKQSTNFLKA-LSSEYCPVFAAFITSVLTPDSLT 106
           A L   Q TN +    SS  CP+F    T+ +TP + T
Sbjct: 37  AVLESSQDTNSVGGEASSTACPLFTTIYTNGITPGTTT 74


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = +2

Query: 35  QLRTDNVHLTETQKEKAKQYTSE----CVKESGVSTEVINAAKTGQYSEDKAFKK 187
           Q +   V + +  K+  +Q  S+     VKE      V NAAKT    ED   KK
Sbjct: 287 QKKQKKVEVAKESKDSKQQNVSDKKQVTVKEVPKKLSVKNAAKTTNRDEDSKGKK 341


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 35  QLRTDNVHLTETQKEKAKQYTSECVKES 118
           Q   D   +TE  KE+ K+ TS   KES
Sbjct: 35  QEEKDTSKITENAKEEVKRDTSSLAKES 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,942
Number of Sequences: 5004
Number of extensions: 37500
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)