Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30066
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    31   0.56 
SB_36114| Best HMM Match : Spectrin (HMM E-Value=0.034)                28   4.0  
SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  

>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -2

Query: 358 ISKALSAASCPVLSLHCSSTLWASDLLTPGGSFLANI 248
           +S  +S AS PVLS H     W SD++TP  + LA++
Sbjct: 512 VSPLVSRASSPVLSAHSQ---WNSDIITPHENQLASV 545


>SB_36114| Best HMM Match : Spectrin (HMM E-Value=0.034)
          Length = 352

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 20  GVRRLQLRTDNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKA 178
           G+    L  +  H  +T+K+   + + E  K S V T+  NAAKTG   E  A
Sbjct: 178 GLGSSTLDINRFHSPKTRKKFEARLSEEEGKVSHVRTQYENAAKTGMLDEATA 230


>SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +2

Query: 50  NVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSE 169
           N HL     E+   ++ +C+K + + ++ ++  KTG+  E
Sbjct: 253 NAHLVHADSEQDGIFSDKCIKLAHMHSDAVDFPKTGECPE 292


>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1503

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = -3

Query: 213 DLLKKQSTNFLKALSSEYCPVFAAFITSVLTPDSLTHSEVYCLAFSF*VSVRWTLSVRS* 34
           DL+ + ST  +   + E  P     ITS L  D       Y LA +F +   W L + + 
Sbjct: 690 DLVLRTSTGGVSTAAMEAWPEPTPLITSALRADWTWLGRRYGLATTFLIISLWCLFILAK 749

Query: 33  RRRT 22
            RRT
Sbjct: 750 DRRT 753


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,470,020
Number of Sequences: 59808
Number of extensions: 263283
Number of successful extensions: 710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)