Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30063
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal prote...   130   7e-31
AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal pro...   130   7e-31
U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    29   1.3  
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U41016-7|ABC71807.1|  476|Caenorhabditis elegans Sensory axon gu...    28   4.0  
U41016-6|ABC71808.1|  474|Caenorhabditis elegans Sensory axon gu...    28   4.0  
AF275634-1|AAF91417.1|  469|Caenorhabditis elegans SAX-1 Ndr pro...    28   4.0  
Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z34989-1|CAA84441.1|  404|Caenorhabditis elegans Ndr protein kin...    27   9.2  
U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    27   9.2  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    27   9.2  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    27   9.2  

>U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal protein
           L27 homolog protein.
          Length = 136

 Score =  130 bits (313), Expect = 7e-31
 Identities = 59/81 (72%), Positives = 68/81 (83%)
 Frame = +3

Query: 12  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191
           MGKIMKPGKVVLVL G+YAGRKA+VVK  DEG SD+ Y HA +AGIDRYP KV K MGK 
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60

Query: 192 KIHKRSKIKPFVKVVNYNHLM 254
           KI KR+K+KPF+KVV+Y HL+
Sbjct: 61  KIEKRNKLKPFLKVVSYTHLL 81



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 29/54 (53%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
 Frame = +2

Query: 257 TRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 412
           TRY+VD +F+K   + + LK P+K++K     + +FEERYK+GKNKWFF KLRF
Sbjct: 83  TRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136


>AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 27 protein.
          Length = 136

 Score =  130 bits (313), Expect = 7e-31
 Identities = 59/81 (72%), Positives = 68/81 (83%)
 Frame = +3

Query: 12  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191
           MGKIMKPGKVVLVL G+YAGRKA+VVK  DEG SD+ Y HA +AGIDRYP KV K MGK 
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60

Query: 192 KIHKRSKIKPFVKVVNYNHLM 254
           KI KR+K+KPF+KVV+Y HL+
Sbjct: 61  KIEKRNKLKPFLKVVSYTHLL 81



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 29/54 (53%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
 Frame = +2

Query: 257 TRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 412
           TRY+VD +F+K   + + LK P+K++K     + +FEERYK+GKNKWFF KLRF
Sbjct: 83  TRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136


>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 18  KIMKPGKVVLVLSGRYAGRKAIVVK 92
           K + PG V++VL+GR+ G++ + +K
Sbjct: 69  KTLTPGTVLIVLAGRHKGKRVVFLK 93


>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical
           protein F20B10.1 protein.
          Length = 1180

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 261 RVASSDYSLQPSRKALSWTSCGFYSFPSSCALSGGTCRYQR 139
           R  SS YS +  +  L W     YS   SCA++ G+C + R
Sbjct: 604 RSPSSWYSTRSDKHGLQWGEAPPYSRMCSCAIN-GSCLHNR 643


>U41016-7|ABC71807.1|  476|Caenorhabditis elegans Sensory axon
           guidance protein 1,isoform a protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 111 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMQ 257
           SD P      A I R+  +  +R+G +      K  PFVK +++NH+ +
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRE 391


>U41016-6|ABC71808.1|  474|Caenorhabditis elegans Sensory axon
           guidance protein 1,isoform b protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 111 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMQ 257
           SD P      A I R+  +  +R+G +      K  PFVK +++NH+ +
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRE 391


>AF275634-1|AAF91417.1|  469|Caenorhabditis elegans SAX-1 Ndr
           protein kinase protein.
          Length = 469

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 111 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMQ 257
           SD P      A I R+  +  +R+G +      K  PFVK +++NH+ +
Sbjct: 336 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRE 384


>Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical
           protein F46B3.17 protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 78  PCDPRTGHLRPALLYPASLSYPS 10
           P D  TGH RPAL  P     PS
Sbjct: 550 PLDSGTGHSRPALFAPPRAQLPS 572


>Z34989-1|CAA84441.1|  404|Caenorhabditis elegans Ndr protein kinase
           protein.
          Length = 404

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 111 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMQ 257
           SD P      A I R+  +  +R+G +      K  PFVK +++NH+ +
Sbjct: 285 SDVPISIEAKATIKRFCCERERRLGNHGGLDEIKQCPFVKRIDWNHIRE 333


>U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical
           protein C31H1.1 protein.
          Length = 693

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 270 LTSALKNSAQKT*KTLQNVRSCVSTREYVLK 362
           L  AL+NSAQK    L ++ + VST  Y L+
Sbjct: 651 LFDALQNSAQKCGVALSDLMTAVSTSSYSLE 681


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 360  SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 265
            S+ T V + +SFL   G +R F LNF+++ S++
Sbjct: 1250 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1282


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 360  SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 265
            S+ T V + +SFL   G +R F LNF+++ S++
Sbjct: 1153 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1185


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 360  SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 265
            S+ T V + +SFL   G +R F LNF+++ S++
Sbjct: 1164 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,062,011
Number of Sequences: 27780
Number of extensions: 194485
Number of successful extensions: 686
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)