BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30063 (477 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 104 4e-23 At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi... 101 2e-22 At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) 101 3e-22 At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 33 0.076 At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 33 0.13 At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 33 0.13 At5g63900.1 68418.m08023 PHD finger family protein contains Pfam... 30 0.70 At4g34630.1 68417.m04918 expressed protein 29 1.6 At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)... 28 3.8 At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)... 28 3.8 At1g21890.1 68414.m02740 nodulin MtN21 family protein similar to... 28 3.8 At5g11710.1 68418.m01368 epsin N-terminal homology (ENTH) domain... 27 5.0 At3g23320.1 68416.m02941 hypothetical protein 27 8.7 >At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) Length = 135 Score = 104 bits (249), Expect = 4e-23 Identities = 46/93 (49%), Positives = 64/93 (68%) Frame = +3 Query: 12 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191 M K MKPGK V++L GRY G+KA++VK++D+GT +K YGH VAG+ +YP KV ++ Sbjct: 1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60 Query: 192 KIHKRSKIKPFVKVVNYNHLMQHVIQLTSALKN 290 K K+S++K F KV+NY H+M L LKN Sbjct: 61 KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKN 93 Score = 52.4 bits (120), Expect = 2e-07 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Frame = +2 Query: 131 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDATRYTVDFSFEKF-SAKDL 307 C ++ P + ++D + ++ + K F + + TRYT+D + SA + Sbjct: 41 CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAI 100 Query: 308 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 412 K+ + +FEER+K+GKN+WFF KLRF Sbjct: 101 SSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135 >At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum] Length = 135 Score = 101 bits (243), Expect = 2e-22 Identities = 45/95 (47%), Positives = 65/95 (68%) Frame = +3 Query: 12 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191 M K +K K V++L GRYAG+KA+++K++D+GTSD+ YGH VAG+ +YP KV ++ Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60 Query: 192 KIHKRSKIKPFVKVVNYNHLMQHVIQLTSALKNSA 296 K K+S++K F+K+VNY HLM L LK A Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVA 95 Score = 53.6 bits (123), Expect = 7e-08 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Frame = +2 Query: 131 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDATRYTVDFSFEKFSAKD-L 307 C ++ P + ++D + ++ + K F + L TRYT+D ++ + D L Sbjct: 41 CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDAL 100 Query: 308 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 412 K K+ + + EER+K+GKN+WFF KLRF Sbjct: 101 KSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135 >At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) Length = 135 Score = 101 bits (242), Expect = 3e-22 Identities = 44/95 (46%), Positives = 64/95 (67%) Frame = +3 Query: 12 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191 M K +K K V++L GRYAG+KA+++K++D+G D+PYGH VAG+ +YP KV ++ Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60 Query: 192 KIHKRSKIKPFVKVVNYNHLMQHVIQLTSALKNSA 296 K K+S++K F+K+VNY HLM L LK A Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVA 95 Score = 52.0 bits (119), Expect = 2e-07 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Frame = +2 Query: 131 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDATRYTVDFSFEKFSAKD-L 307 C ++ P + ++D + ++ + K F + L TRYT+D ++ + D L Sbjct: 41 CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDAL 100 Query: 308 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 412 + K+ + + EER+K+GKN+WFF KLRF Sbjct: 101 QSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135 >At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar to 60S ribosomal protein L6 GI:7208784 from [Cicer arietinum] Length = 233 Score = 33.5 bits (73), Expect = 0.076 Identities = 11/35 (31%), Positives = 23/35 (65%) Frame = +3 Query: 3 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 107 P+K+ + PG V+++L+GR+ G++ + +K G Sbjct: 82 PTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116 >At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309 from [Cyanophora paradoxa] Length = 233 Score = 32.7 bits (71), Expect = 0.13 Identities = 11/35 (31%), Positives = 23/35 (65%) Frame = +3 Query: 3 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 107 P+K+ + PG V+++L+GR+ G++ + +K G Sbjct: 82 PAKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116 >At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309 from [Cyanophora paradoxa] Length = 233 Score = 32.7 bits (71), Expect = 0.13 Identities = 11/35 (31%), Positives = 23/35 (65%) Frame = +3 Query: 3 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 107 P+K+ + PG V+++L+GR+ G++ + +K G Sbjct: 82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116 >At5g63900.1 68418.m08023 PHD finger family protein contains Pfam domain, PF00628: PHD-finger Length = 557 Score = 30.3 bits (65), Expect = 0.70 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +2 Query: 338 FNTRVRFEERYKSGKNKWFF 397 +N R + E+RYKS K KWF+ Sbjct: 58 YNKRNKKEQRYKSPKGKWFY 77 >At4g34630.1 68417.m04918 expressed protein Length = 199 Score = 29.1 bits (62), Expect = 1.6 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +3 Query: 99 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 212 D+G D+ Y ++ + PR V K++G+ ++ K K Sbjct: 130 DDGEEDREYDDSYDLDEELVPRSVSKKVGRQRMRKLGK 167 >At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1) identical to transcription factor (TGA1) GI:16550 from [Arabidopsis thaliana] Length = 368 Score = 27.9 bits (59), Expect = 3.8 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Frame = +3 Query: 84 VVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNK-IHKRSKIKPFVKVVNYNHLMQH 260 V ++ GT+ P+ A R+P K+ +R+ +N+ ++S+++ V Sbjct: 57 VSEDTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLK 116 Query: 261 VIQLTSALKNSAQK 302 +IQL L + Q+ Sbjct: 117 LIQLEQELDRARQQ 130 >At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1) identical to transcription factor (TGA1) GI:16550 from [Arabidopsis thaliana] Length = 368 Score = 27.9 bits (59), Expect = 3.8 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Frame = +3 Query: 84 VVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNK-IHKRSKIKPFVKVVNYNHLMQH 260 V ++ GT+ P+ A R+P K+ +R+ +N+ ++S+++ V Sbjct: 57 VSEDTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLK 116 Query: 261 VIQLTSALKNSAQK 302 +IQL L + Q+ Sbjct: 117 LIQLEQELDRARQQ 130 >At1g21890.1 68414.m02740 nodulin MtN21 family protein similar to MtN21 GI:2598575 (root nodule development) from [Medicago truncatula] Length = 389 Score = 27.9 bits (59), Expect = 3.8 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Frame = -2 Query: 398 GRTTCSSHFCTSLQNVLAC*NAASYVLQGLSGLLR*IFQS*SQLYNVLHQVIIVYN-LHE 222 G T S+ F ++ NVL A ++VL + L F+ + V+ VI V L Sbjct: 95 GMTYTSATFASATANVLP---AITFVLAIIFRLESVNFKKVRSIAKVVGTVITVSGALLM 151 Query: 221 RLYLGPLVDFI 189 LY GP+VDFI Sbjct: 152 TLYKGPIVDFI 162 >At5g11710.1 68418.m01368 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain; similar to Af10-protein (GI:1724114) [Avena fatua]; similar to clathrin assembly protein AP180 (GI:6492344) [Xenopus laevis]; Af10-protein, Avena fatua, EMBL:U80041 Length = 560 Score = 27.5 bits (58), Expect = 5.0 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Frame = -1 Query: 366 LSSKRTRVLKRSFLRFAGSFRSFALNFSKLKSTV*RVASSDY-SLQPSRKALSWTSCGFY 190 LSS S F GSF+S + NF K R +DY S Q SR+ + T Y Sbjct: 165 LSSTGITYKSGSSASFGGSFQSGSSNFDSYKDRDSREDKNDYESFQKSRRGVK-TEEQSY 223 Query: 189 SFPSSCALSGGT 154 + S + G T Sbjct: 224 TSKKSFSRYGST 235 >At3g23320.1 68416.m02941 hypothetical protein Length = 191 Score = 26.6 bits (56), Expect = 8.7 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +2 Query: 23 NEAG*SSAGLKWPVRGSQG 79 N AG +GL+W +R SQG Sbjct: 46 NHAGRQDSGLRWIIRNSQG 64 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,545,738 Number of Sequences: 28952 Number of extensions: 185112 Number of successful extensions: 580 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 565 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 578 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 821630280 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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