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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30063
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)           104   4e-23
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi...   101   2e-22
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)           101   3e-22
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    33   0.076
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    33   0.13 
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    33   0.13 
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam...    30   0.70 
At4g34630.1 68417.m04918 expressed protein                             29   1.6  
At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)...    28   3.8  
At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)...    28   3.8  
At1g21890.1 68414.m02740 nodulin MtN21 family protein similar to...    28   3.8  
At5g11710.1 68418.m01368 epsin N-terminal homology (ENTH) domain...    27   5.0  
At3g23320.1 68416.m02941 hypothetical protein                          27   8.7  

>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 
          Length = 135

 Score =  104 bits (249), Expect = 4e-23
 Identities = 46/93 (49%), Positives = 64/93 (68%)
 Frame = +3

Query: 12  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191
           M K MKPGK V++L GRY G+KA++VK++D+GT +K YGH  VAG+ +YP KV ++    
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 192 KIHKRSKIKPFVKVVNYNHLMQHVIQLTSALKN 290
           K  K+S++K F KV+NY H+M     L   LKN
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKN 93



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = +2

Query: 131 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDATRYTVDFSFEKF-SAKDL 307
           C     ++ P +  ++D  +   ++ + K F +      +  TRYT+D   +   SA  +
Sbjct: 41  CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAI 100

Query: 308 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 412
               K+       + +FEER+K+GKN+WFF KLRF
Sbjct: 101 SSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135


>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
           to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
           tuberosum]
          Length = 135

 Score =  101 bits (243), Expect = 2e-22
 Identities = 45/95 (47%), Positives = 65/95 (68%)
 Frame = +3

Query: 12  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191
           M K +K  K V++L GRYAG+KA+++K++D+GTSD+ YGH  VAG+ +YP KV ++    
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 192 KIHKRSKIKPFVKVVNYNHLMQHVIQLTSALKNSA 296
           K  K+S++K F+K+VNY HLM     L   LK  A
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVA 95



 Score = 53.6 bits (123), Expect = 7e-08
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
 Frame = +2

Query: 131 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDATRYTVDFSFEKFSAKD-L 307
           C     ++ P +  ++D  +   ++ + K F +      L  TRYT+D   ++ +  D L
Sbjct: 41  CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDAL 100

Query: 308 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 412
           K   K+       + + EER+K+GKN+WFF KLRF
Sbjct: 101 KSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135


>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
          Length = 135

 Score =  101 bits (242), Expect = 3e-22
 Identities = 44/95 (46%), Positives = 64/95 (67%)
 Frame = +3

Query: 12  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191
           M K +K  K V++L GRYAG+KA+++K++D+G  D+PYGH  VAG+ +YP KV ++    
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 192 KIHKRSKIKPFVKVVNYNHLMQHVIQLTSALKNSA 296
           K  K+S++K F+K+VNY HLM     L   LK  A
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVA 95



 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
 Frame = +2

Query: 131 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDATRYTVDFSFEKFSAKD-L 307
           C     ++ P +  ++D  +   ++ + K F +      L  TRYT+D   ++ +  D L
Sbjct: 41  CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDAL 100

Query: 308 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 412
           +   K+       + + EER+K+GKN+WFF KLRF
Sbjct: 101 QSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 33.5 bits (73), Expect = 0.076
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 3   PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 107
           P+K+   + PG V+++L+GR+ G++ + +K    G
Sbjct: 82  PTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116


>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 3   PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 107
           P+K+   + PG V+++L+GR+ G++ + +K    G
Sbjct: 82  PAKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 3   PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 107
           P+K+   + PG V+++L+GR+ G++ + +K    G
Sbjct: 82  PTKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116


>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 557

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 338 FNTRVRFEERYKSGKNKWFF 397
           +N R + E+RYKS K KWF+
Sbjct: 58  YNKRNKKEQRYKSPKGKWFY 77


>At4g34630.1 68417.m04918 expressed protein
          Length = 199

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 99  DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 212
           D+G  D+ Y  ++    +  PR V K++G+ ++ K  K
Sbjct: 130 DDGEEDREYDDSYDLDEELVPRSVSKKVGRQRMRKLGK 167


>At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)
           identical to transcription factor (TGA1) GI:16550 from
           [Arabidopsis thaliana]
          Length = 368

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 84  VVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNK-IHKRSKIKPFVKVVNYNHLMQH 260
           V ++   GT+  P+     A   R+P K+ +R+ +N+   ++S+++    V         
Sbjct: 57  VSEDTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLK 116

Query: 261 VIQLTSALKNSAQK 302
           +IQL   L  + Q+
Sbjct: 117 LIQLEQELDRARQQ 130


>At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)
           identical to transcription factor (TGA1) GI:16550 from
           [Arabidopsis thaliana]
          Length = 368

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 84  VVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNK-IHKRSKIKPFVKVVNYNHLMQH 260
           V ++   GT+  P+     A   R+P K+ +R+ +N+   ++S+++    V         
Sbjct: 57  VSEDTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLK 116

Query: 261 VIQLTSALKNSAQK 302
           +IQL   L  + Q+
Sbjct: 117 LIQLEQELDRARQQ 130


>At1g21890.1 68414.m02740 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 389

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -2

Query: 398 GRTTCSSHFCTSLQNVLAC*NAASYVLQGLSGLLR*IFQS*SQLYNVLHQVIIVYN-LHE 222
           G T  S+ F ++  NVL    A ++VL  +  L    F+    +  V+  VI V   L  
Sbjct: 95  GMTYTSATFASATANVLP---AITFVLAIIFRLESVNFKKVRSIAKVVGTVITVSGALLM 151

Query: 221 RLYLGPLVDFI 189
            LY GP+VDFI
Sbjct: 152 TLYKGPIVDFI 162


>At5g11710.1 68418.m01368 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to
           Af10-protein (GI:1724114) [Avena fatua]; similar to
           clathrin assembly protein AP180 (GI:6492344) [Xenopus
           laevis]; Af10-protein, Avena fatua, EMBL:U80041
          Length = 560

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -1

Query: 366 LSSKRTRVLKRSFLRFAGSFRSFALNFSKLKSTV*RVASSDY-SLQPSRKALSWTSCGFY 190
           LSS        S   F GSF+S + NF   K    R   +DY S Q SR+ +  T    Y
Sbjct: 165 LSSTGITYKSGSSASFGGSFQSGSSNFDSYKDRDSREDKNDYESFQKSRRGVK-TEEQSY 223

Query: 189 SFPSSCALSGGT 154
           +   S +  G T
Sbjct: 224 TSKKSFSRYGST 235


>At3g23320.1 68416.m02941 hypothetical protein 
          Length = 191

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 23  NEAG*SSAGLKWPVRGSQG 79
           N AG   +GL+W +R SQG
Sbjct: 46  NHAGRQDSGLRWIIRNSQG 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,545,738
Number of Sequences: 28952
Number of extensions: 185112
Number of successful extensions: 580
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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