Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30061
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha... 31 0.24
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha... 31 0.24
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 30 0.43
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 29 0.99
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe... 28 1.7
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 27 2.3
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 27 3.0
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 3.0
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 27 4.0
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 4.0
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 5.3
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 7.0
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 26 7.0
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 26 7.0
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces... 26 7.0
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 25 9.2
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 9.2
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 25 9.2
>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 30.7 bits (66), Expect = 0.24
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 363 LPDDSVDLLVSSLTFHWVNDLPGLFDRIMKCLKPDGVL 476
L D+SVDL+ FHW + L I + LKP+G L
Sbjct: 94 LEDESVDLVACGQCFHWFANEEAL-KEIYRVLKPNGKL 130
>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 363 LPDDSVDLLVSSLTFHWVNDLPGLFDRIMKCLKPDGVL 476
L D+SVDL++ + FHW + + I + LKP+G L
Sbjct: 98 LEDESVDLVLCAQCFHWFANEEAM-KEIYRVLKPNGKL 134
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 29.9 bits (64), Expect = 0.43
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -2
Query: 357 NFPHPLSSFHIERPHQLLPYRDEFWMCHTVSPSPPVRQEMP*YISTRGSQFYSVFERSFN 178
N+P+PL + H+ L YRD+ + H V+PS E S +Q S E S +
Sbjct: 249 NYPYPLDASHLSSQQLLSMYRDQ--VSHGVTPSTFRNHE-----SFMPTQLVSATELSKS 301
Query: 177 VEYFV-SCPPT 148
V+ V PPT
Sbjct: 302 VDNAVLPIPPT 312
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 539 LERRGGVSP-HISPFTRPTDIGGLLNAAGFTLQTVDIDKMTI 661
L R G+ P HIS F++ + L ++G+TL DK +
Sbjct: 1412 LRPRNGMHPDHISGFSKEVETDPKLGSSGYTLNNSKFDKAAV 1453
>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +3
Query: 360 ELPDDSVDLLVSSLTFHWVNDLPGLFDRIMKCLKPDGVLLACTF 491
++PD+S+D+ + +P + ++ + LKP GV F
Sbjct: 179 KIPDNSIDMYTIAFGIRNCTHIPKVLEQAYRVLKPGGVFSCLEF 222
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +2
Query: 440 QDNEMPQT*WCVAGLHLRWRHPDE----LRQALQLSDLERRGGVSPHIS 574
+D++ P +A + W+HPD + QA+ + + +R G SPH+S
Sbjct: 255 RDDDSPTANIAIAVEGMSWKHPDYFTALVMQAI-IGNWDRAMGASPHLS 302
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 544 LQVRQLERLTQLIRVSPPKVQASNTPSGLRHFIILSKSPGRS 419
L R ++ + L R PP + A+ T LR+F I + P +S
Sbjct: 3 LPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQS 44
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 52 MNIFDRKTKMIQRERAACNDEYHLSEYVKEE--IGWRTADKIFDIKRTFKNAVEL 210
M I + K ++QR+ DE +SE +EE + + F++ K A+EL
Sbjct: 658 MEILNDKISVLQRQLTDVKDELDVSEEEREEAIVAGQKLSASFELMSNEKQALEL 712
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 233 DTYPREAPSSTAFLNVLLMSNILSAVR 153
D YPR P STA L+V L+S + S R
Sbjct: 580 DDYPRAQPPSTAELHVDLLSWMTSFTR 606
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 233 DTYPREAPSSTAFLNVLLMSNILSAVRQPISS 138
+T E PSS + +NV +++ + S RQ ISS
Sbjct: 156 NTASHEVPSSKSDVNVQMLARLKSKSRQKISS 187
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 390 PTDQRCRLVIQNFPHPLSSFH 328
P C LV+ NF HP SS +
Sbjct: 1007 PVISACELVVNNFLHPQSSLY 1027
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 628 RKTSSIEQTPNVRGSGKR*YMRRNPSSPLQVRQLERLTQLIRVSPP-KVQASNTP 467
R S + TP + + ++R N S+P Q R+ E T+ V+ P KV+A + P
Sbjct: 300 RSHSPVLLTPQTLSTSETKHIRPNNSTPYQ-RRAETSTKPKAVATPQKVEAPSAP 353
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 360 ELPDDSVDLLVSSLTFHWVNDLPGLFDRIMK 452
E+P +S D++ S+ HW+ P +MK
Sbjct: 91 EIPSESFDVVFSNAALHWIMRQPKNRPIVMK 121
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 178 IKRTFKNAVELGASRGYVSRHFLPDRW 258
+K T V+LG GY++ PDRW
Sbjct: 94 LKSTTIIQVQLGEVIGYIANFDFPDRW 120
>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 140 SLTYSDKWYSSLQAALSLCIILV-FLSNIFIVRY 42
S+ S W+ + + LS+C + + FL+ IF R+
Sbjct: 78 SINTSRSWFRAFLSFLSICFLFISFLNFIFSTRF 111
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 193 KNAVELGASRGYVSRHFLPDRWRR 264
KN VEL R YVS F + W R
Sbjct: 457 KNGVELVYPRKYVSNGFSAEHWYR 480
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 547 PLQVRQLERLTQLIRVSPPKVQASNTPSGLRHFIILSKSPGRS 419
PL+ L + L R+S +A LR+ II KSPG S
Sbjct: 735 PLRRSHLSTGSALFRISTQASKARGITVYLRNDIIWKKSPGAS 777
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 133 VKEEIGWRTADKIFDIKRTFKNAVELGASR 222
VKE I R + + D+ KNAV G +R
Sbjct: 315 VKESIELRPEEAVIDVDELDKNAVLFGGTR 344
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,435,149
Number of Sequences: 5004
Number of extensions: 74390
Number of successful extensions: 224
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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