Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30061
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0640 - 5391407-5391523,5391659-5391748,5391837-5391901,539... 82 6e-16
03_02_0200 - 6360682-6362517,6362599-6362670 42 4e-04
01_06_0361 + 28733493-28733523,28733743-28733870,28733982-287340... 34 0.11
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 32 0.59
05_07_0074 - 27509124-27509199,27509613-27512143 30 2.4
04_03_0265 - 13638816-13641348,13641432-13641490 30 2.4
04_03_0264 - 13619329-13621708,13621742-13621830 30 2.4
10_04_0004 + 7389321-7390013 29 3.1
06_01_1183 + 10157813-10159909 29 3.1
04_04_0775 - 27989704-27990281,27990407-27990653,27990743-279908... 29 3.1
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 29 3.1
09_06_0081 + 20745627-20748144,20748211-20748308 29 4.1
11_06_0082 + 19891184-19891332,19891349-19891445,19891584-198917... 28 7.2
09_02_0549 + 10485415-10486107 28 9.6
05_03_0579 - 15714195-15714887 28 9.6
05_03_0219 + 10451316-10451718,10451812-10452008 28 9.6
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22... 28 9.6
04_03_0007 + 9287927-9288619 28 9.6
>12_01_0640 -
5391407-5391523,5391659-5391748,5391837-5391901,
5392201-5392288,5392511-5392589,5393232-5393370,
5393530-5393863
Length = 303
Score = 81.8 bits (193), Expect = 6e-16
Identities = 40/85 (47%), Positives = 53/85 (62%)
Frame = +2
Query: 509 ELRQALQLSDLERRGGVSPHISPFTRPTDIGGLLNAAGFTLQTVDIDKMTIWYPSAFELM 688
ELR A ++ +ER GG+SP +SP + D G LL AGFTL VD+D+ T+ Y SA EL+
Sbjct: 159 ELRIACTIAQMEREGGISPRMSPLAQVRDAGNLLTRAGFTLPGVDVDRYTVKYNSALELV 218
Query: 689 RDLRLAGESNAAHNRSGHLPRDVQL 763
LR GE+NA R+ L +D L
Sbjct: 219 EHLRAMGETNALFQRNPILKKDTAL 243
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 52 MNIFDRKTKMIQRERAACNDEYHLSEYVKEEIGWRTADKIFDIKRTFKNAVELGASRGYV 231
+ IFDR K R+RAA ++ + + + D++ D ++ F +A+ LG S G V
Sbjct: 47 VKIFDRDLKRRHRDRAAW--AMGETDALADAVADNLLDRLEDCRKAFPSALCLGGSAGAV 104
Query: 232 SR 237
R
Sbjct: 105 RR 106
>03_02_0200 - 6360682-6362517,6362599-6362670
Length = 635
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +2
Query: 470 CVAGLHLRWRHPDELRQALQLSDLERRGGVSPHISPFTRPTDIGGLLNAA----GFTLQT 637
C+ GL + + H D +++AL L+ +ER GG HI + G++N + GF
Sbjct: 229 CIRGLKISFFHHDIVKRALTLA-MERGGGAEGHILDLLKSASDEGIINESQITKGFNRLI 287
Query: 638 VDIDKMTIWYPSAFELMRDLRLAGES 715
+D +T+ P+A L++ + L S
Sbjct: 288 DSVDDLTLDVPNARRLLKSMILKASS 313
>01_06_0361 +
28733493-28733523,28733743-28733870,28733982-28734044,
28735074-28735211,28735357-28735494,28735700-28735843,
28736065-28736175,28736260-28736401,28736469-28736779,
28737057-28737218,28737313-28737366,28737472-28737546,
28737636-28737731
Length = 530
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +3
Query: 294 LDKAIVGEGVQYEKMIMDEENFELPDDSVDLLVSSLTFHWVNDLPGLFDRIMKCLKPDGV 473
L++AI G E + D PD++ D++ S T + D P LF K LKP G
Sbjct: 362 LERAI-GRKCSVEFEVADCTKKTYPDNTFDVIYSRDTILHIQDKPSLFKSFFKWLKPGGK 420
Query: 474 LL 479
+L
Sbjct: 421 VL 422
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 363 IQNFPHPLSSFHIERPHQLLPYRDEFWMCHTVSPSPP 253
+QNF +++ + P LLP + + CH VS PP
Sbjct: 343 VQNFQGNINNAQVHTPQTLLPQYNVYPQCHGVSMMPP 379
>05_07_0074 - 27509124-27509199,27509613-27512143
Length = 868
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = -3
Query: 305 CLIEMSSGCVTQCHLLHLSGRKCRDTYPREAPSSTAFLNVLLMSNILSAVRQPISSLTYS 126
C++ SG ++L R YP A + F+ L S + +P+S +TY+
Sbjct: 172 CMVGTGSGRAADGTAVNLLSAVLRVRYPGRANLTRPFVTGSLESTDSPSFFEPVSLVTYA 231
Query: 125 DKWYSSLQAA 96
++ Y+ ++A
Sbjct: 232 EEGYAYAESA 241
>04_03_0265 - 13638816-13641348,13641432-13641490
Length = 863
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 714 LSPANLRSRISSKALGYQIVILSMSTVCNVKPAALSKPPMSVGLVN 577
L+P L S+I+ K Y ++ + +C K +S+P SV L+N
Sbjct: 717 LAPEWLTSQITEKVDVYSFGVVLLEIICGRKNIDISQPEESVQLIN 762
>04_03_0264 - 13619329-13621708,13621742-13621830
Length = 822
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 714 LSPANLRSRISSKALGYQIVILSMSTVCNVKPAALSKPPMSVGLVN 577
L+P L S+I+ K Y ++ + +C K +S+P SV L+N
Sbjct: 676 LAPEWLTSQITEKVDVYSFGVVLLEIICGRKNIDISQPEESVQLIN 721
>10_04_0004 + 7389321-7390013
Length = 230
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = +2
Query: 497 RHPDELRQALQLSDLERRGGVSPHISPFTRPTDIGGLLNAAGFTLQTVDIDKMTIWYPSA 676
+HP ++ A + + R +P I+P RP D L N G + V DK PS
Sbjct: 156 QHPRQVLSAPGRATVVRSSN-APRIAPIWRPIDKSPLGNPTGKKILPVTADKTVAPPPS- 213
Query: 677 FELMRDLRLAGESNAAHN 730
++ + + GE++ + N
Sbjct: 214 -KINKQSNVPGETSGSRN 230
>06_01_1183 + 10157813-10159909
Length = 698
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Frame = -3
Query: 560 KPLLS-APSQTVGAPDAAHQG--VSTEGASQQHTIR---FEAFHYP 441
KP+LS A + DA + G STEG++QQHTI+ F+ F +P
Sbjct: 226 KPVLSVAVDLSPYLRDAMYVGFSASTEGSTQQHTIKEWTFQTFGFP 271
>04_04_0775 -
27989704-27990281,27990407-27990653,27990743-27990837,
27990918-27992388,27993142-27993194,27993295-27993430
Length = 859
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 514 QLIRVSPPKVQASNTPSGLRHFIILSKSPGRSFT 413
+L+ PPK+ +++P G+ +IL SPGRS T
Sbjct: 288 KLVMRRPPKL--NDSPRGVSRIVILKPSPGRSQT 319
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 22 QKTASSIYRTMNIFDRKTKMIQRERAACND--EYHLSEYVKEEIG 150
+K SSI+ N+F RK K+++ + E H +Y KE+IG
Sbjct: 198 EKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH-GDYAKEDIG 241
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 562 RNPSSPLQVRQLERLTQLIRVSPPKVQASNTPS 464
R PS+PL +R L + +RVS P +AS+ P+
Sbjct: 566 RMPSAPLALRALAPHLRALRVSVPHPRASSAPA 598
>11_06_0082 +
19891184-19891332,19891349-19891445,19891584-19891725,
19891853-19891935,19892356-19892490,19892759-19892863,
19893043-19893168
Length = 278
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 414 VNDLPGLFDRIMKCLKPDGVLLACTFGGDTLMSCVRRSNCLTWSGE 551
V+++ + + I K LKP+G+ ++ TFG + TWS E
Sbjct: 175 VDNVMKMLEGIHKVLKPEGIFVSITFGQPHFRRRFFEAPGFTWSVE 220
>09_02_0549 + 10485415-10486107
Length = 230
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 560 SPHISPFTRPTDIGGLLNAAGFTLQTVDIDKMTIWYPSAFELMRDLRLAGESNAAHN 730
+P I+P RP D L N G + V DK PS ++ + + GE++ + N
Sbjct: 176 APRIAPIWRPIDKSPLGNPTGKKILPVTADKTVAPPPS--KINKQSNVPGETSGSRN 230
>05_03_0579 - 15714195-15714887
Length = 230
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 560 SPHISPFTRPTDIGGLLNAAGFTLQTVDIDKMTIWYPSAFELMRDLRLAGESNAAHN 730
+P I+P RP D L N G + V DK PS ++ + + GE++ + N
Sbjct: 176 APRIAPIWRPIDKSPLGNPTGKKILPVTADKTVAPPPS--KINKQSNVPGETSGSRN 230
>05_03_0219 + 10451316-10451718,10451812-10452008
Length = 199
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 560 SPHISPFTRPTDIGGLLNAAGFTLQTVDIDKMTIWYPSAFELMRDLRLAGESNAAHN 730
+P I+P RP D L N G + V DK PS ++ + + GE++ + N
Sbjct: 145 APRIAPIWRPIDKSPLGNPTGKKILPVTADKTVAPPPS--KINKQSNVPGETSGSRN 199
>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
225296-225356,225666-226918
Length = 1891
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 702 NLRSRISSKALGYQIVILSMSTVCNVKPAALSKPP--MSVGLVNGDI*GETPPL 547
++ S I K Q + LS +++ PA+L+KPP +S+ L + G P L
Sbjct: 1692 SIPSFIGDKFTALQSLDLSFNSLTGAIPASLAKPPKLISIDLSRNQLTGSIPRL 1745
>04_03_0007 + 9287927-9288619
Length = 230
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 560 SPHISPFTRPTDIGGLLNAAGFTLQTVDIDKMTIWYPSAFELMRDLRLAGESNAAHN 730
+P I+P RP D L N G + V DK+ PS ++ + + GE++ + N
Sbjct: 176 APGIAPIWRPIDKSPLGNPTGKKILPVTADKIVAPPPS--KINKQSNVPGETSGSRN 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,003,378
Number of Sequences: 37544
Number of extensions: 553311
Number of successful extensions: 1774
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1774
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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