BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30061 (781 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 25 1.0 DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 22 5.6 AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 7.4 >AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine receptor protein. Length = 694 Score = 24.6 bits (51), Expect = 1.0 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Frame = -3 Query: 155 RQPISSLTYSDKW--YSSLQAALSLCIILVFL-SNIF 54 R P L Y+ + YSSL + CII+VFL NIF Sbjct: 331 RTPDQCLFYNTDFIIYSSLSSFYIPCIIMVFLYYNIF 367 >DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel protein. Length = 489 Score = 22.2 bits (45), Expect = 5.6 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = -1 Query: 592 RGSGKR*YMRRNPSSPLQVRQLERLTQLIRVSPPKVQASN 473 R +G R Y + P + + R ++RVS PK++ N Sbjct: 424 RNAGLR-YRGPKQNKPKVLHAIRRGASILRVSMPKIKDVN 462 >AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein protein. Length = 1124 Score = 21.8 bits (44), Expect = 7.4 Identities = 10/37 (27%), Positives = 21/37 (56%) Frame = -2 Query: 708 PANLRSRISSKALGYQIVILSMSTVCNVKPAALSKPP 598 P N+ + ++S ++ VI + + V +P ++S PP Sbjct: 730 PTNVATTVTSMSIDQSTVIQTGANVNLWQPLSVSIPP 766 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 231,514 Number of Sequences: 438 Number of extensions: 4934 Number of successful extensions: 7 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7 length of database: 146,343 effective HSP length: 57 effective length of database: 121,377 effective search space used: 24518154 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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