Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30058
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    29   0.83 
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    27   4.4  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    27   4.4  
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    27   4.4  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   5.9  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    26   7.8  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    26   7.8  

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 722 VEFYEKEKVVGEEFINNGPTY*KTTHRYGTT 814
           ++ + KE  +G E  NN P Y   T  YGTT
Sbjct: 501 IDCFYKELKIGNEQGNNAPGYSSVTSGYGTT 531


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 332 QLAGHPRQLEQQIFLLHQNERSFPHLLPERKTAYS*NLPVAGGDS 466
           QL    RQLE+++ +L     +F   LP R  + S +LP  G  S
Sbjct: 124 QLRQKVRQLEEELRILKDGSFTFEMSLPHRNPSLS-SLPTTGFSS 167


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 790 DNSSIWYDW 816
           DNS+IWYDW
Sbjct: 822 DNSTIWYDW 830


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 22/74 (29%), Positives = 31/74 (41%)
 Frame = -3

Query: 663 AVAVMLPGLRFQQPTTPVQKAMNNVKNATMNNATVDRAICSLFIASSERPLVRCSRRE*S 484
           A+A + PG+ FQ+    ++K  N++   T    +V R  C   I      L  CS    S
Sbjct: 251 AIAAVKPGVLFQEFGNIIEKHTNSI---TEKQISVVRTYCGHGI----NQLFHCSP---S 300

Query: 483 SPHYCSESPPATGR 442
            PHY     P   R
Sbjct: 301 IPHYSHNKAPGIAR 314


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 790 DNSSIWYDW 816
           DNS++WYDW
Sbjct: 800 DNSTVWYDW 808


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -3

Query: 543 SLFIASSERPLVRCSRRE*SSPHYCSESPPATGRFQL 433
           S  IAS +R LVR S  +   P   +E  PA GRF L
Sbjct: 540 SRHIASRKRALVRISFLDGLFPLCLAEECPALGRFIL 576


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 493 PTRTTNQRPLRRCNEQATYGSVN 561
           PTRT+  RPL R N     GS++
Sbjct: 240 PTRTSTTRPLSRVNVTNASGSIS 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,067
Number of Sequences: 5004
Number of extensions: 62236
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)