Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30058
(848 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0004 - 133130-133897 33 0.38
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 30 2.7
07_01_0297 - 2156960-2157736 30 2.7
11_01_0336 - 2517349-2518725 29 4.7
12_02_0156 - 14532000-14532098,14532669-14534330,14534445-145346... 29 6.2
11_06_0257 + 21746643-21748091 29 6.2
06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985... 29 6.2
06_03_0218 + 18219956-18220555 28 8.2
01_06_0630 - 30723903-30724496 28 8.2
>09_01_0004 - 133130-133897
Length = 255
Score = 32.7 bits (71), Expect = 0.38
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 697 RRQQTCDEHQYSGGGDVAGTALPAADDARP 608
RR++T D + +GGG+V T L A +DA P
Sbjct: 102 RRRRTGDAAEAAGGGEVVATPLDAGEDASP 131
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 351 DSLNNKYFFYTRTRGLFRICYPKERPPTVEIYLSPVETHCSNVDYFIPDEN 503
D +++K+ F RG+ R C+ + P + + +H S D DE+
Sbjct: 83 DKISDKFEFIVHRRGVHRFCFTNKSPYHETVDFDVLVSHFSYYDQHAKDEH 133
>07_01_0297 - 2156960-2157736
Length = 258
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +1
Query: 424 DRLQLKSTCRRWRLTAVMWTTSFPTRTTNQRPLRRCNEQATYGSVNGGVVH 576
DRL+ ++ CRRWRL A W P P + + TY S+ G VH
Sbjct: 51 DRLRFRAVCRRWRLAA--W-QQHPLPPA--LPWLNLDGRITYQSLPDGEVH 96
>11_01_0336 - 2517349-2518725
Length = 458
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 421 KDRLQLKSTCRRWRLTAVMWTTSFPTRTTNQRPLRRCN-EQATYGSVNGGVVH 576
+DRL+ ++ CR WRL A P + PL + ++ATY S+ G VH
Sbjct: 47 RDRLRFQAVCRSWRLAA-------PRQHPLPPPLPWLSLDRATYQSLPDGEVH 92
>12_02_0156 -
14532000-14532098,14532669-14534330,14534445-14534660,
14534730-14534907,14535065-14535276
Length = 788
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 275 LYRSKAI*HSVIRCGELGGQLAGHPRQLEQQIFLLHQNERSFPHLLPERKT 427
L+RS A+ H +I G +++ L +Q + H +FPHL +RKT
Sbjct: 737 LFRSVALRHMLIMPKFQGPEISPIVGILTRQDLIAHNILGAFPHLASKRKT 787
>11_06_0257 + 21746643-21748091
Length = 482
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 614 GVVGCWKRSPGNITATAILML-VTCLLSAGAM-ALWH 718
GV+ CW+ P ++ T L + LL +GA+ A WH
Sbjct: 9 GVIQCWETLPEDLLVTVFCQLEIPDLLRSGAVCASWH 45
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 772 IVDKLLSYNLLFFIKLNPVPQCHSARRQQTCDEHQYSGGGDVA 644
IVD+L + L + V C R +C H +GGGD A
Sbjct: 162 IVDRLYNRPSLVRVPAREVRDCMYFRAVLSCGPHAAAGGGDAA 204
>06_01_1159 -
9852316-9852441,9852743-9852838,9852912-9852977,
9853091-9853180,9853262-9853373,9853515-9853598,
9853864-9853940,9854823-9854873,9854924-9855031,
9855703-9855774,9856952-9857011,9857808-9857876,
9858005-9858088,9858212-9858295,9859106-9859198,
9859930-9860030,9861155-9861264,9863058-9863104,
9863693-9863778,9863940-9864012,9864454-9864540,
9864650-9865301,9866164-9867182,9867702-9867797
Length = 1180
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 630 QQPTTPVQKAMNNVKNATMNNATVDRAICSLFIASSERPLV 508
++ T+ K + K + +NAT IC++ S ++PLV
Sbjct: 248 EKKTSSRSKKSSKAKESAASNATAKAEICTMTSVSEQKPLV 288
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 691 QQTCDEHQYSGGGDVAGTALPAADDARP 608
++T DE Q +G G+V T L +DA P
Sbjct: 48 RRTGDEQQPAGDGEVVATPLDTGEDASP 75
>01_06_0630 - 30723903-30724496
Length = 197
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 393 LSFWCRRNICCSSCRG*PASCPPSSP 316
L W RRN C CR P P ++P
Sbjct: 150 LDAWLRRNASCPVCRSSPIPTPVATP 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,883,150
Number of Sequences: 37544
Number of extensions: 443564
Number of successful extensions: 1404
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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