Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30058
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical pr...    62   5e-10
AC024847-1|AAK29961.1|  193|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z36719-4|CAA85315.2|  513|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z92803-9|CAC35822.1|  248|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical
           protein F53B3.5 protein.
          Length = 339

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
 Frame = +2

Query: 500 EQRTKGLSDDAMNRLHMARSTVALFIVAFLTLFIAFWTGVVGCWKRSPGNITATAILMLV 679
           E + +  S++ + R + A++T+  ++V  + + ++F  G++GCW RS   I +T IL+++
Sbjct: 121 ESKKEHFSNNELYRHYAAKATIIAYVVGIVFVVLSFIVGLIGCWNRSKKFIMSTGILLIL 180

Query: 680 TCLLSAGAMALWHGVEFYEKEKVVGEEFINNGPTY*KTT--HRYG 808
             L  + AM LWH V + E+  +  E +  +     K T  H YG
Sbjct: 181 AGLSMSVAMLLWHYVAYSERYTLDVEPYYKSWEPILKLTSRHNYG 225



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
 Frame = +3

Query: 258 STDNWLYIEVKRSNI-QSYAAENSAGNSQVILDSLNNKYFFYTRTRGLFRICYPKERPPT 434
           +TDNW+ ++V R  I  S+  E     S  + ++  +   +++R  GLF +C+P   P  
Sbjct: 43  TTDNWVEVQVNRREIINSFKREPEL--SLRLQNAFGHNNIYFSRNYGLFNLCFPDTVPQD 100

Query: 435 VEIYLSPVETHC--SNVDYFIPDENNE 509
           V  + S + + C  SN ++ +P+   E
Sbjct: 101 VGSF-SKMGSPCIWSN-EFMVPESKKE 125



 Score = 34.7 bits (76), Expect = 0.084
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 763 YQQWPNVLKDNSSIWYDWSYILAWLSVG 846
           Y+ W  +LK  S   Y WSYI++W+ +G
Sbjct: 209 YKSWEPILKLTSRHNYGWSYIVSWIGIG 236


>AC024847-1|AAK29961.1|  193|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.8 protein.
          Length = 193

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 426 VFLSGSRCGKDLSFWCRRNICCSS 355
           VFL G RC +D+  W R++  CSS
Sbjct: 162 VFLEGKRCKEDIDTWLRQDNKCSS 185


>Z36719-4|CAA85315.2|  513|Caenorhabditis elegans Hypothetical
           protein C06C3.8 protein.
          Length = 513

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 559 NGGVVHCGVLDVVHCFLDGRRRLLEAQSRQHHRHRYTDARHMSAVGGRYGTVARG--*VL 732
           + G  +CG LD V       + +   +S   HR++      M+++G   G V R    V+
Sbjct: 144 DSGASNCGSLDGVRSVTRKGKTMKTMKSGLPHRNQTDQKNEMTSMGECIGEVIREDYLVI 203

Query: 733 *KREGCRRGVYQQ 771
              + CRR +Y+Q
Sbjct: 204 NSSDNCRRPLYKQ 216


>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = -1

Query: 509 FVVLVGNEVVHITAVSLHRRQVDFNCRRSFFRVADAEKTSRSGVEEI 369
           FV +V   V++ITAV   R+ V FN  R+ FR    + TS + + +I
Sbjct: 192 FVAVVAGAVMNITAVLTFRKVVSFN--RTLFRQRSFKLTSLTEIYQI 236


>Z92803-9|CAC35822.1|  248|Caenorhabditis elegans Hypothetical
           protein K01G5.10 protein.
          Length = 248

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 237 CFNGHSFSTDNWLYIEVKRSNIQSYAAENSAGNSQVILDSLNNKY 371
           CF  +     +W +IEV  S +   A ++  G  +VI  +L N Y
Sbjct: 74  CFGFNGIGNKSW-WIEVVSSTLLDCAPDSEKGRVEVIAGALYNHY 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,318,595
Number of Sequences: 27780
Number of extensions: 377283
Number of successful extensions: 1128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)