Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30057
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    80   4e-16
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.94 
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    28   1.6  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   5.0  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   5.0  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.0  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   8.7  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   8.7  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   8.7  

>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 79.8 bits (188), Expect = 4e-16
 Identities = 38/56 (67%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
 Frame = +3

Query: 3   IIVSELLGSWGDNELSPECLDGASNLL-KPGGISIPSSYRSYVAPITSPRLWAAAK 167
           I+VSELLGS GDNELSPECLDG  ++L +  GI IPSSY SYV PI SP+LW+ A+
Sbjct: 418 ILVSELLGSMGDNELSPECLDGVQHVLDEETGICIPSSYISYVTPIMSPKLWSEAR 473



 Score = 58.8 bits (136), Expect = 8e-10
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
 Frame = +2

Query: 266 VFTFNHPSKAVKDEEGCDKSDYRGLPLTNNRRQATLTWDVQQDNIMHGFGGYFDCTLYGN 445
           +++F+HP+K   D E   K+        +N+R A++ +      I+HGF GYF+ TLY +
Sbjct: 506 LWSFHHPNK---DSEVYTKN-------LHNKRFASVRFQASSPGILHGFAGYFEATLYKD 555

Query: 446 EMISIVPGT---HSPGMISWFPVFFQLR 520
             +SI+P T    SP M SWFP++  ++
Sbjct: 556 ISLSIMPATMEAKSPDMFSWFPIYMPIK 583



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
 Frame = +1

Query: 511 PIKTPMRVQKGDKITATFWRCVDSRRVWYEW------VVEVGNR----STPLHNANGRS 657
           PIK PM V +  ++    WR  D  RVW+EW      V+  G++    ST +HN +G++
Sbjct: 581 PIKKPMYVPENSQLEFHMWRLTDGMRVWFEWCANAYLVLRNGSQIKLSSTEVHNISGKA 639


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 443 NEMISIVPGTHSPGMISWFPVFFQL 517
           N +I    GT +PG +SWFP  + L
Sbjct: 69  NNIIGKSLGTTNPGQLSWFPASYSL 93


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -1

Query: 597 VPYTTRVNTP-PERCCYFITLLYSHWCLNWKKT--GNQEIIPGLCVPGTMLIISLP*RVQ 427
           +P  + V TP P     +  L+++   ++W  T     E  P L +PG +L+ S+    +
Sbjct: 182 IPQHSWVFTPTPIMVFRYSALMFNAHMIHWNATYATKSENYPNLVLPGPLLVTSMLEYFR 241

Query: 426 SKYP 415
           S YP
Sbjct: 242 SVYP 245


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 537  LYSHWCLNWKKTGNQEIIPGLCVPGTMLIISLP 439
            L  HWC  + +TG     P    PG   ++SLP
Sbjct: 1782 LIKHWCNFFTETGPLCDFPRAYYPGIYELVSLP 1814


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 341 PLTNNRRQATLTWDVQQDNIMHGFGGYFDCTL 436
           PLTNN+ QA L W+ +Q   +     +    L
Sbjct: 421 PLTNNKIQANLGWNERQRQCLSSCSSHLSLAL 452


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 650 PLALCSGVDRLPTSTTHSYHTRRESTHLQNVAVILSPFCTR 528
           P A  S +DRLP+ ++ S+     S  + N  V +SP   R
Sbjct: 102 PHADVSKIDRLPSDSSESHVATPSSPTISNSFVSVSPLLKR 142


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 620 LPTSTTHSYHTRRESTHLQNVAVILSPFCTRIGVLIGKR 504
           +P +T   Y +R    H Q     LSP+C  + V I KR
Sbjct: 388 IPPTTPQIYISRTPVRHTQFDVNFLSPYCDWVIVEICKR 426


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 618 THFNYPFVPYTTRVNTPPER 559
           +HFN  F P+T  +  PP R
Sbjct: 36  SHFNPQFTPFTKSLAPPPSR 55


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 33  GDNELSPECLDGASNLLKP-GGISIPSSYRSYVAPITSPRLWAAAKIATSGIPQQKDKNL 209
           GD+ L+   +DGASN+ +         S+RS  AP  S     A +  +  +PQ  ++ +
Sbjct: 99  GDH-LAIRRVDGASNVTQDYRKAKTKRSFRSVSAPSLSALATQAQRNVSKTLPQSTNETI 157

Query: 210 ETL 218
           E L
Sbjct: 158 EKL 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,419,918
Number of Sequences: 5004
Number of extensions: 79041
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)