Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30057
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   7.6  
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           23   7.6  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    23   7.6  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 616 PLQLPIRTIHDASQH 572
           P+QLP++TI D + H
Sbjct: 7   PVQLPVQTITDTNVH 21


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 57  CLDGASNLLKPGGISIPSSYRSYVAPITSPRLWAAAKIATSGIPQQKDKNLET 215
           C++ A++   P   S PSS+ S    +  P   AAA ++ S   QQ+   L +
Sbjct: 207 CMELAASA-DPSRNSGPSSWMSGAGSVGGPSSAAAAMLSASSGGQQQHARLSS 258


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 493 GDHSWAMCTRNNADHFITIKGTI-KIPSKAMHNV 395
           GD++W +C    +DH  TIK  + ++P +  + V
Sbjct: 191 GDNNWRVCDETPSDH-NTIKFVVGRVPRQRANYV 223


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 865,905
Number of Sequences: 2352
Number of extensions: 19910
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)