Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30057
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               25   1.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.3  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 153 WAAAKIATSGIPQQKDKNLETLWVVYMQNKHDIAKQSS 266
           WAA K   +G  +Q D+NL+     +M  KH I  +++
Sbjct: 37  WAALKKMKAGDMEQDDQNLKCYLKCFM-TKHGILDKNA 73


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 299 LRLWMDG*T*RRALFCNIMFILHV 228
           + LW++  +  R +  N+ FILH+
Sbjct: 263 MTLWLEPSSTERMIIANLNFILHL 286


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 275 FNHPSKAVKDEEGCDKSDYRGLPLTNNRRQATLTWDVQQDN 397
           FN+ +K   D    + +DY      N+RR+ T     ++DN
Sbjct: 103 FNNKNKDGDDNNDYEDNDYGNQDNRNDRRKKTFA--AREDN 141


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 615 HFNYPFVPYTTRVNTPPERC 556
           +F+YP VPYT + N  P RC
Sbjct: 139 NFDYPQVPYTVK-NFHP-RC 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,157
Number of Sequences: 438
Number of extensions: 5851
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)