Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30054
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -3

Query: 654 LHYQWLDTHLIRKQQLLYNFLQLLH 580
           L  QW D  L    +  Y FL  +H
Sbjct: 113 LQQQWYDPRLRYSNRSQYEFLNAIH 137


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -3

Query: 654 LHYQWLDTHLIRKQQLLYNFLQLLH 580
           L  QW D  L    +  Y FL  +H
Sbjct: 113 LQQQWYDPRLRYSNRSQYEFLNAIH 137


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -3

Query: 654 LHYQWLDTHLIRKQQLLYNFLQLLH 580
           L  QW D  L    +  Y FL  +H
Sbjct: 164 LQQQWYDPRLRYSNRSQYEFLNAIH 188


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -3

Query: 654 LHYQWLDTHLIRKQQLLYNFLQLLH 580
           L  QW D  L    +  Y FL  +H
Sbjct: 113 LQQQWYDPRLRYSNRSQYEFLNAIH 137


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 635 IRT*FVNSNYSIISYNFFMQLPLIFTRYPFGS 540
           +R+ F  S  S++  +   +  L +T+YPFG+
Sbjct: 4   VRSIFFLSLVSVVLLDTTQEEKLEWTKYPFGA 35


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 463  ERVDVTKLTQSRKIKYSLDNIRF*YID 543
            E +D  KLT      +++DN R+  +D
Sbjct: 1094 ELIDTEKLTDRLPYPWTMDNERYVKVD 1120


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/38 (28%), Positives = 14/38 (36%)
 Frame = -3

Query: 117 YNEIGTTNMNTTRSHIINFLNLNT*RGPVSFHATRGNF 4
           YN     N N  +    N +N+     PV      GNF
Sbjct: 338 YNNYNNNNYNNYKKLYYNIINIEQIPVPVPVPIYCGNF 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,231
Number of Sequences: 438
Number of extensions: 3851
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)