Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30053
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1160 - 34996840-34996979,34997316-34997478,34997970-349983... 34 0.11
06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215 33 0.25
12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753 32 0.58
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237... 30 1.8
08_02_1389 - 26657739-26657890,26658097-26658171,26658372-266587... 30 2.3
04_04_1416 - 33411900-33412148,33412735-33412854,33412986-334132... 30 2.3
02_02_0596 - 11976168-11976319,11976529-11976603,11976804-119771... 30 2.3
03_05_0545 + 25419031-25420758 29 3.1
04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951... 29 5.4
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821... 28 7.1
09_02_0448 - 9458463-9459752 28 7.1
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 28 9.4
06_01_0779 - 5823389-5823787 28 9.4
05_04_0225 + 19209957-19210047,19210067-19210128,19210686-192107... 28 9.4
01_06_0265 - 28011181-28011240,28011298-28011375,28011493-280118... 28 9.4
>01_06_1160 -
34996840-34996979,34997316-34997478,34997970-34998388,
34998413-34998620
Length = 309
Score = 34.3 bits (75), Expect = 0.11
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +1
Query: 403 GDGAFDCGDYELHLESGGGRQRLGSAPGIAGVHGRRDHSPS---GGPYARL-PTRAIKKN 570
GDG D G YE + SGGG G A G GV G H S GG A L P RA+ +
Sbjct: 59 GDGWPDLGSYEGGVISGGGGHLWGGAHG-RGVGGSGSHHRSASQGGGSADLPPVRAVSRT 117
Query: 571 I 573
+
Sbjct: 118 L 118
>06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215
Length = 376
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -2
Query: 511 HVAHGLQQCQGQSQAAAYHHPILGGVHSHHNRMPHPHFRDTSS 383
H H Q AA + H GG H HH PH H+ D S
Sbjct: 182 HHHHPFPPAQLHGGAADHKHDGAGGHHHHHLMQPHHHYDDFPS 224
>12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753
Length = 375
Score = 31.9 bits (69), Expect = 0.58
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 508 VAHGLQQCQGQSQAAAYHHPILGGVHSHHNRMPHPHFRDTSS 383
++H LQ Q Y+H ++ H HH+R H+ ++S
Sbjct: 234 ISHELQHIHHHQQQQFYYHEVVHDGHGHHHRRHLQHYAGSAS 275
>04_04_0910 -
29321128-29321276,29321977-29322508,29323301-29323706,
29323933-29324028,29324563-29324645,29326620-29326732,
29327156-29327315
Length = 512
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 508 VAHGLQQCQGQSQAAAYHHPILGGVHSHHNRMPH-PH 401
V H L Q G ++ A P+LG H HH + H PH
Sbjct: 183 VPHDLHQLLGDAEHA---EPVLGAQHVHHGELEHLPH 216
>08_02_1389 -
26657739-26657890,26658097-26658171,26658372-26658711,
26659849-26659918,26660836-26660930
Length = 243
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 400 SGDGAFDCGDYELHLESGGGRQRLGSAPGI 489
S A D GD LHL G GR RLGS P +
Sbjct: 117 SSSPAGDGGDGRLHLADGAGR-RLGSRPAV 145
>04_04_1416 -
33411900-33412148,33412735-33412854,33412986-33413235,
33413998-33414131
Length = 250
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +1
Query: 394 P*SGDGAFDCGDYELHL-ESGGGRQRLGSAPGIAGVHGRRDHSPSGG 531
P GDG D G + H + GGG G G G H DH GG
Sbjct: 191 PDGGDGGGDGGGHHEHGGDHGGGWHHHGGDHGGGGHHFSGDHGGGGG 237
>02_02_0596 -
11976168-11976319,11976529-11976603,11976804-11977143,
11978281-11978350,11979267-11979361
Length = 243
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 400 SGDGAFDCGDYELHLESGGGRQRLGSAPGI 489
S A D GD LHL G GR RLGS P +
Sbjct: 117 SSSPAGDGGDGRLHLADGAGR-RLGSRPAV 145
>03_05_0545 + 25419031-25420758
Length = 575
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 614 NSTVIRLVSIVLGKMFFFIALVGKRAYGPPDGEWSRRPWTPA 489
++ + L +LG + +A A PP G W R PW A
Sbjct: 369 HALAVLLGGALLGLLLAALAAATTEAASPPRGRWRRVPWLAA 410
>04_04_0739 -
27693768-27694305,27694765-27694912,27694987-27695188,
27695802-27695864,27695865-27696120,27697811-27697953
Length = 449
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 462 AAAWLCPWHCWSPWAT*PLTIRW 530
+A W PW+ WS W PL + W
Sbjct: 241 SAPWFKPWYWWS-WPVLPLGLSW 262
>10_08_0883 +
21279913-21280235,21281066-21281327,21281998-21282199,
21282289-21282436,21282541-21283084
Length = 492
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 462 AAAWLCPWHCWSPWAT*PLTIRW 530
+A W PW+ WS W PL + W
Sbjct: 282 SAPWFKPWYWWS-WPILPLGLSW 303
>09_02_0448 - 9458463-9459752
Length = 429
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 617 NNSTVIRLVSIVLGKMFFFIALVGKRAYGPPDGEWSRRPWTPAMPGAEPS 468
+N +RLVS+V G + F+ G P+ S R T MPG + S
Sbjct: 296 DNPDDVRLVSVVGGDLKVFLRRDGSGDAWEPEKNLSLRDATSGMPGRKES 345
>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 27.9 bits (59), Expect = 9.4
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = +3
Query: 336 KIVMFIHRVTPDTLKLELVSLKWGW 410
++++F H V+P T ++L+ + +GW
Sbjct: 1702 RVLIFCHNVSPITFLVKLIEMVFGW 1726
>06_01_0779 - 5823389-5823787
Length = 132
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -2
Query: 547 ANEHTAHLMVSGHVAHGLQQCQGQSQAAAYHHPILGGVHSHHNRMPHP 404
A+EH V+G AH L + +A H P G+ H +R P
Sbjct: 7 ADEHGVERNVAGAPAHELNEADAVCRALGLHVPDSDGLLRHLHRCVEP 54
>05_04_0225 +
19209957-19210047,19210067-19210128,19210686-19210720,
19211859-19211938,19212276-19212359,19212575-19212683,
19213306-19213444
Length = 199
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 633 SYSEFK*FNCHSARFYCTRKDVFFYCPCRQTSIRPT*W*VVTSPMDSSNA 484
S + +N A C RK +++ PC++T + V+ +P D S A
Sbjct: 116 SQGHYDDYNVQLAVGQCPRKCIYYVTPCQRTILEEILASVLMTPYDLSEA 165
>01_06_0265 -
28011181-28011240,28011298-28011375,28011493-28011802,
28012913-28013533,28013733-28013818
Length = 384
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 484 QGQSQAAAYHHPILGGVHSHHNRMPHPHFRDTS 386
Q S +AA P H+HHN H H D+S
Sbjct: 96 QPSSSSAAAWSPARDHAHAHHNHHHHHHPSDSS 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,583,767
Number of Sequences: 37544
Number of extensions: 412553
Number of successful extensions: 1206
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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