Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30052
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.0  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 605 VPWTSQREHHH 573
           +P T+QR+HHH
Sbjct: 560 LPKTTQRQHHH 570


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 576 VVLTL*CPRNCKL*PLN 626
           + LTL CP N KL PL+
Sbjct: 154 ISLTLSCPMNLKLYPLD 170


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 576 VVLTL*CPRNCKL*PLN 626
           + LTL CP N KL PL+
Sbjct: 154 ISLTLSCPMNLKLYPLD 170


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 444 THKILNQHFFYQFYLLL 394
           +H ++ Q+FFYQ Y  L
Sbjct: 192 SHCVVCQNFFYQIYATL 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,931
Number of Sequences: 438
Number of extensions: 3746
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)