Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30052
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27325.1 68416.m03415 expressed protein                             29   4.3  
At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do...    28   7.6  

>At3g27325.1 68416.m03415 expressed protein
          Length = 1048

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 222 KRWINMKMLGINKNNNFVFPLMCPPSDG 305
           +RW+++ +LG N  N+F+F     P  G
Sbjct: 447 RRWLDIDLLGSNGKNHFIFVTNLVPCSG 474


>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 990

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 698 SEIYTSFYIFFYCYTVDQAHSS 633
           S + +S+Y ++YCY   Q H+S
Sbjct: 56  SNLPSSYYYYYYCYFYSQFHNS 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,331,629
Number of Sequences: 28952
Number of extensions: 273774
Number of successful extensions: 648
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)