Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30051
(291 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 28 0.24
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 0.24
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 28 0.32
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 26 0.97
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 26 0.97
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 1.7
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 3.0
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 25 3.0
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 25 3.0
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 24 3.9
SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 3.9
SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 3.9
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 23 9.1
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 23 9.1
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 28.3 bits (60), Expect = 0.24
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 68 TIDEFENLYKDVSTSRAAEFETLVSQNASRETGNHNT---SGAAADDAETDLKSNLSEFE 238
T++EF + Y A E V A RE+G+ T AD A DL S L ++E
Sbjct: 423 TLEEFTHAYNYQQIHEPALDEYFVHDRAVRESGHDTTYRLEKVCADLATVDLNSLLYKYE 482
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 0.24
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 77 EFENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSNLSEFERVK 247
E N K++ TS+ AE E + + S + NH +A+ DAE K +FE++K
Sbjct: 1438 ELTNKNKEL-TSKNAENEAMQKEIESLKDSNHQLQESASSDAEQITK---EQFEQLK 1490
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 27.9 bits (59), Expect = 0.32
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -1
Query: 156 LLAFCETSVSNSAARDVDTSLYRFSNSSIVL--SAGTASVSLVSVMMTSAAGLS 1
L+ C + S SA D+D L+R S ++L S ASVS++S ++ +S
Sbjct: 1526 LVQDCSENKSFSATLDLDRLLFRISVYDLLLLQSIAQASVSVISSYKDKSSSIS 1579
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 0.97
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +2
Query: 44 TDAVPADNTIDEFENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDL 214
TD VP +NT+ NLY D+ + A + S GN + A D+
Sbjct: 254 TDPVPYNNTVMVMPNLYGDIVSDMCAGLIGGLGLTPSGNIGNQASIFEAVHGTAPDI 310
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 0.97
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +2
Query: 68 TIDEFENLYKDVSTSRAAEFETLVSQNASR--ETGNHNTS--GAAADDAETDLKSNLSEF 235
++ E + K + +F+ V QN+ ETG + S A + AET+ SNLS F
Sbjct: 3 SVQSTETIQKVLENEGDQQFDKEVVQNSDSNIETGQISDSLTKAVEERAETESSSNLSNF 62
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.4 bits (53), Expect = 1.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 47 DAVPADNTIDEFENLYKDVSTSRAAEFETLVSQNASRETGNH 172
+A+P + + + N + S + E+ L+S A +E NH
Sbjct: 647 EAIPVEPSCQDLANRVFECSGNTPVEWTRLLSPEAEKEDENH 688
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 3.0
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = -1
Query: 138 TSVSNSAARDVDTSLYRFSNSSIVLSAGTASVSLV 34
T+V+ S A VDT + SS+V SA T+SVS V
Sbjct: 187 TTVAASVASSVDTDSASATISSVVDSA-TSSVSTV 220
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 24.6 bits (51), Expect = 3.0
Identities = 13/57 (22%), Positives = 25/57 (43%)
Frame = +2
Query: 26 ITLTRDTDAVPADNTIDEFENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAAD 196
IT+ D +A+P I++ + S + F + +E+G H+ A+D
Sbjct: 243 ITMRIDKEALPFMKNINQLSERLLEKSLGNSKRFNNENEETYLKESGFHDLEEEASD 299
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 24.6 bits (51), Expect = 3.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 104 STSRAAEFETLVSQNASRETGNHNT 178
+T+ A T+ QNA+ TGN NT
Sbjct: 80 NTTTNAPQSTVFGQNAASRTGNSNT 104
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 24.2 bits (50), Expect = 3.9
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Frame = +2
Query: 8 PAADVIITLTRDTDAVPADNTIDEFENLYKDVST-------SRAAEFETLVSQNASRETG 166
P + I + R +P D +N YKD T + ETL ++ +
Sbjct: 216 PRVNSISRVQRRMSYIPYGGFDDFLDNYYKDDDTVLEDNQLKSNSRIETLEEEDGAESDS 275
Query: 167 NHNTSGAAADDAE 205
NT A+ DAE
Sbjct: 276 ITNTVSNASSDAE 288
>SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 24.2 bits (50), Expect = 3.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 32 LTRDTDAVPADNTIDEFENLYKDVSTSRAAEFETLVSQNASRET 163
++ T+ V + ID E LY D SR TLV+Q+A T
Sbjct: 15 ISNSTNNVTHELLIDLHE-LYNDGEISRIVLLRTLVTQSADDAT 57
>SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 24.2 bits (50), Expect = 3.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 32 LTRDTDAVPADNTIDEFENLYKDVSTSRAAEFETLVSQNASRET 163
++ T+ V + ID E LY D SR TLV+Q+A T
Sbjct: 15 ISNSTNNVTHELLIDLHE-LYNDGEISRIVLLRTLVTQSADDAT 57
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 23.0 bits (47), Expect = 9.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 62 DNTIDEFENLYKDVSTSRAAEFETL 136
D + EF KDV +A+EF L
Sbjct: 475 DTPLKEFTTTLKDVDNEQASEFYQL 499
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 23.0 bits (47), Expect = 9.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 80 FENLYKDVSTSRAAEFETLVSQNASRE 160
F N YK V E+ET++S+ ++E
Sbjct: 331 FPNFYKKVDEYCGTEWETMLSRLYNKE 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 866,579
Number of Sequences: 5004
Number of extensions: 11952
Number of successful extensions: 67
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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