Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30051
(291 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 28 1.1
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880... 28 1.4
11_01_0634 - 5085037-5085296,5085393-5085995,5087253-5087406,508... 27 1.9
01_01_0473 - 3478660-3480338,3480507-3480609 27 2.5
06_02_0044 - 10913591-10913720,10914268-10914572,10915191-109153... 26 4.4
02_01_0415 + 3037720-3039849 26 4.4
01_03_0164 + 13349295-13349489,13349509-13349939,13350181-13350589 26 4.4
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 26 5.8
02_04_0608 - 24308212-24308396,24308579-24308889,24308994-24309034 26 5.8
02_01_0422 - 3084940-3087072 26 5.8
07_03_0935 - 22738221-22738328,22739207-22739237,22739901-227400... 25 7.7
03_01_0639 - 4678993-4679034,4679880-4679945,4680040-4680150,468... 25 7.7
02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735 25 7.7
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 25 7.7
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = +2
Query: 62 DNTIDEFENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSNLSEFER 241
+N I E +KD+ST A E +V + +H T D E S+ +
Sbjct: 623 ENFISIIEKHHKDMSTWDNARLENMVKDKSGTPVCSHRTLRKFMDTFEEKDTSHWDKLRE 682
Query: 242 VKYNRG 259
Y++G
Sbjct: 683 EAYSKG 688
>03_05_0064 -
20385290-20385346,20385452-20387133,20387266-20388083,
20388184-20388303,20389036-20389305,20390094-20390269
Length = 1040
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +2
Query: 86 NLYKDVSTSRAAEFETLVSQNASR--ETGNHNTSGAAADDAETDLKSNLSEFERVKYNRG 259
N + V TS+ + E L + S + N +TSG+A+ +E+D +SN S E K RG
Sbjct: 523 NTNRTVQTSKVSVSERLRNGRPSSGFDDENSSTSGSASVSSESDDESN-SPSEDSKQCRG 581
Query: 260 V 262
V
Sbjct: 582 V 582
>11_01_0634 -
5085037-5085296,5085393-5085995,5087253-5087406,
5087510-5087671,5087789-5088676
Length = 688
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 165 PVSLLAFCETSVSNSAARDVDTSLYRFSNSSIVLSAGTASVSLV 34
P S FC S S RD S Y F+N + VL G + ++
Sbjct: 245 PSSSEDFCGESDSGDCGRDGCESCYGFTNKNCVLLEGLSEAKML 288
>01_01_0473 - 3478660-3480338,3480507-3480609
Length = 593
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/57 (22%), Positives = 24/57 (42%)
Frame = +2
Query: 41 DTDAVPADNTIDEFENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETD 211
+T + P D E K RAA F+ + S + + G+++ +E+D
Sbjct: 115 ETQSAPPTPKPDSEETTPKQKRKPRAAGFDVFLGSGGSSDISKKGSDGSSSSSSESD 171
>06_02_0044 -
10913591-10913720,10914268-10914572,10915191-10915391,
10916620-10917042
Length = 352
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/54 (24%), Positives = 30/54 (55%)
Frame = -1
Query: 162 VSLLAFCETSVSNSAARDVDTSLYRFSNSSIVLSAGTASVSLVSVMMTSAAGLS 1
+S+++ ++ VSN D+SL ++++++ GTA + +S AG++
Sbjct: 69 ISMMSISDSGVSNQDNAAGDSSLLDIASATLMSDLGTAGKPKSLIGSSSEAGVN 122
>02_01_0415 + 3037720-3039849
Length = 709
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 47 DAVPADNTIDEFENLY 94
+A+P D TID FENL+
Sbjct: 426 EAMPEDETIDGFENLH 441
>01_03_0164 + 13349295-13349489,13349509-13349939,13350181-13350589
Length = 344
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 80 FENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKS 220
F N+ D S + A + Q G +T GAAAD ++T K+
Sbjct: 295 FSNVVGDYSYTAAQSSANRLDQMHHPVGGRGSTGGAAADPSDTQSKN 341
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 26 ITLTRDTDAVPADNTIDEFENLYKDVSTSRAAEFETLVSQNA 151
+ LT +D + A I EFE + + +S + + E +V QN+
Sbjct: 1373 VLLTVLSDVLKAKGVIHEFETGFNAIQSSFSVDPEEVVCQNS 1414
>02_04_0608 - 24308212-24308396,24308579-24308889,24308994-24309034
Length = 178
Score = 25.8 bits (54), Expect = 5.8
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +2
Query: 92 YKDVSTSRA--AEFETLVSQNASRETGNHNTSGAAADDAETDLKSNLSEFERVKYNR 256
Y VS RA L + +S + AAADD E+D+K R K NR
Sbjct: 31 YASVSFRRALWVHVSFLARRRSSPVKPADEAAAAAADDDESDVKRGRKRRSRNKRNR 87
>02_01_0422 - 3084940-3087072
Length = 710
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 47 DAVPADNTIDEFENLY 94
+A+P D TID FEN++
Sbjct: 426 EAMPQDETIDGFENIF 441
>07_03_0935 -
22738221-22738328,22739207-22739237,22739901-22740095,
22740693-22740782,22740900-22741037,22741959-22742108,
22743589-22744766
Length = 629
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 35 TRDTDAV--PADNTIDEFENLYKDVSTSRAAEFETLVSQNASRETGNH 172
T D +V P D+ IDE + L +D ++ A E S +AS +H
Sbjct: 98 TTDASSVSNPEDDPIDELDVLDEDTASGLGAADEVPASASASSLVWDH 145
>03_01_0639 -
4678993-4679034,4679880-4679945,4680040-4680150,
4680266-4680304,4680394-4680493,4680597-4680712,
4680897-4681035,4681151-4681222,4681331-4681434,
4681616-4681867
Length = 346
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 102 TSLYRFSNSSIVLSAGTASVSLVSVMMTSA 13
T+ + FSNSS +S+GTA + L ++ S+
Sbjct: 214 TTAFYFSNSSRNISSGTALLPLSKTVIASS 243
>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
Length = 738
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 91 VQRCVDVSSCGV*DAGLTEREQGDREPQ 174
V+ VDV GV D + E E+G+RE +
Sbjct: 536 VEGGVDVGEEGVGDGDVDEEEEGEREDE 563
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +2
Query: 77 EFENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSNLSEFERVKYNR 256
E L + +STSR+ + +TL + NAS E D+ T + S++ + R
Sbjct: 748 EILRLRRQISTSRSQKAKTLPNTNASPEVSQAPDEQPVNDNQNTSKVAAGSQYTAKRTTR 807
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,445,609
Number of Sequences: 37544
Number of extensions: 76787
Number of successful extensions: 325
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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