Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30051
(291 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL096764-4|CAM28219.1| 691|Homo sapiens chromosome X open readi... 33 0.17
AL096764-2|CAM28218.1| 1137|Homo sapiens chromosome X open readi... 33 0.17
AL049563-2|CAI43016.2| 691|Homo sapiens chromosome X open readi... 33 0.17
AL049563-1|CAM28289.1| 1137|Homo sapiens chromosome X open readi... 33 0.17
BC071588-1|AAH71588.1| 1128|Homo sapiens COBLL1 protein protein. 29 3.6
AL049939-1|CAB43215.1| 360|Homo sapiens hypothetical protein pr... 29 3.6
AC019181-1|AAX93068.1| 1166|Homo sapiens unknown protein. 29 3.6
AB023194-1|BAA76821.2| 1207|Homo sapiens KIAA0977 protein protein. 29 3.6
X82834-1|CAA58041.1| 2185|Homo sapiens 256 kD golgin protein. 28 6.3
U41740-1|AAC50434.1| 2230|Homo sapiens trans-Golgi p230 protein. 28 6.3
U31906-1|AAC51791.1| 2083|Homo sapiens golgin-245 protein. 28 6.3
CR457112-1|CAG33393.1| 353|Homo sapiens PNMA1 protein. 27 8.3
BC039577-1|AAH39577.1| 353|Homo sapiens paraneoplastic antigen ... 27 8.3
AL834327-1|CAD38995.1| 192|Homo sapiens hypothetical protein pr... 27 8.3
AF320308-1|AAN05100.1| 353|Homo sapiens paraneoplastic antigen ... 27 8.3
AF037364-1|AAD13810.3| 353|Homo sapiens paraneoplastic neuronal... 27 8.3
>AL096764-4|CAM28219.1| 691|Homo sapiens chromosome X open reading
frame 45 protein.
Length = 691
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 80 FENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSN 223
+E LYKDV E +T + S N N + ++DA TD KS+
Sbjct: 57 YEILYKDVFVVDEEELKTAIKLFRSGSKKNRNNAVTGSEDAHTDYKSS 104
>AL096764-2|CAM28218.1| 1137|Homo sapiens chromosome X open reading
frame 45 protein.
Length = 1137
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 80 FENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSN 223
+E LYKDV E +T + S N N + ++DA TD KS+
Sbjct: 366 YEILYKDVFVVDEEELKTAIKLFRSGSKKNRNNAVTGSEDAHTDYKSS 413
>AL049563-2|CAI43016.2| 691|Homo sapiens chromosome X open reading
frame 45 protein.
Length = 691
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 80 FENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSN 223
+E LYKDV E +T + S N N + ++DA TD KS+
Sbjct: 57 YEILYKDVFVVDEEELKTAIKLFRSGSKKNRNNAVTGSEDAHTDYKSS 104
>AL049563-1|CAM28289.1| 1137|Homo sapiens chromosome X open reading
frame 45 protein.
Length = 1137
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 80 FENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSN 223
+E LYKDV E +T + S N N + ++DA TD KS+
Sbjct: 366 YEILYKDVFVVDEEELKTAIKLFRSGSKKNRNNAVTGSEDAHTDYKSS 413
>BC071588-1|AAH71588.1| 1128|Homo sapiens COBLL1 protein protein.
Length = 1128
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 32 LTRDTDAVPADNTIDEFENLYKDVSTSRAAEFETLVS----QNASRETGNHNTSGAA 190
+TRDT P ++E N+ + SRA+ + S Q R +G++ TS AA
Sbjct: 829 MTRDTGTAPFAPNLEEINNILESKFKSRASNAQAKPSSFFLQMQKRVSGHYVTSAAA 885
>AL049939-1|CAB43215.1| 360|Homo sapiens hypothetical protein
protein.
Length = 360
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 32 LTRDTDAVPADNTIDEFENLYKDVSTSRAAEFETLVS----QNASRETGNHNTSGAA 190
+TRDT P ++E N+ + SRA+ + S Q R +G++ TS AA
Sbjct: 61 MTRDTGTAPFAPNLEEINNILESKFKSRASNAQAKPSSFFLQMQKRVSGHYVTSAAA 117
>AC019181-1|AAX93068.1| 1166|Homo sapiens unknown protein.
Length = 1166
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 32 LTRDTDAVPADNTIDEFENLYKDVSTSRAAEFETLVS----QNASRETGNHNTSGAA 190
+TRDT P ++E N+ + SRA+ + S Q R +G++ TS AA
Sbjct: 867 MTRDTGTAPFAPNLEEINNILESKFKSRASNAQAKPSSFFLQMQKRVSGHYVTSAAA 923
>AB023194-1|BAA76821.2| 1207|Homo sapiens KIAA0977 protein protein.
Length = 1207
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 32 LTRDTDAVPADNTIDEFENLYKDVSTSRAAEFETLVS----QNASRETGNHNTSGAA 190
+TRDT P ++E N+ + SRA+ + S Q R +G++ TS AA
Sbjct: 908 MTRDTGTAPFAPNLEEINNILESKFKSRASNAQAKPSSFFLQMQKRVSGHYVTSAAA 964
>X82834-1|CAA58041.1| 2185|Homo sapiens 256 kD golgin protein.
Length = 2185
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 59 ADNTIDEFENLYKDVSTSRAAEFETLVSQNAS--RETGNHNTSGAAADDAETDLKSNLSE 232
A + ++E EN K S A+ E+LV++ + +E GN + + + T LK LSE
Sbjct: 1295 ATHQLEEKENQIK----SMKADIESLVTEKEALQKEGGNQQQAASEKESCITQLKKELSE 1350
>U41740-1|AAC50434.1| 2230|Homo sapiens trans-Golgi p230 protein.
Length = 2230
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 59 ADNTIDEFENLYKDVSTSRAAEFETLVSQNAS--RETGNHNTSGAAADDAETDLKSNLSE 232
A + ++E EN K S A+ E+LV++ + +E GN + + + T LK LSE
Sbjct: 1295 ATHQLEEKENQIK----SMKADIESLVTEKEALQKEGGNQQQAASEKESCITQLKKELSE 1350
>U31906-1|AAC51791.1| 2083|Homo sapiens golgin-245 protein.
Length = 2083
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 59 ADNTIDEFENLYKDVSTSRAAEFETLVSQNAS--RETGNHNTSGAAADDAETDLKSNLSE 232
A + ++E EN K S A+ E+LV++ + +E GN + + + T LK LSE
Sbjct: 1150 ATHQLEEKENQIK----SMKADIESLVTEKEALQKEGGNQQQAASEKESCITQLKKELSE 1205
>CR457112-1|CAG33393.1| 353|Homo sapiens PNMA1 protein.
Length = 353
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 8 PAADVIITLTRDTDAVPADNTIDEFENLYKDVSTSRAAEFETL 136
PAADVI L + A+ + E ++ V +SR A+ + L
Sbjct: 209 PAADVIRILKSNNPAITTAECLKALEQVFGSVESSRDAQIKFL 251
>BC039577-1|AAH39577.1| 353|Homo sapiens paraneoplastic antigen MA1
protein.
Length = 353
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 8 PAADVIITLTRDTDAVPADNTIDEFENLYKDVSTSRAAEFETL 136
PAADVI L + A+ + E ++ V +SR A+ + L
Sbjct: 209 PAADVIRILKSNNPAITTAECLKALEQVFGSVESSRDAQIKFL 251
>AL834327-1|CAD38995.1| 192|Homo sapiens hypothetical protein
protein.
Length = 192
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 8 PAADVIITLTRDTDAVPADNTIDEFENLYKDVSTSRAAEFETL 136
PAADVI L + A+ + E ++ V +SR A+ + L
Sbjct: 48 PAADVIRILKSNNPAITTAECLKALEQVFGSVESSRDAQIKFL 90
>AF320308-1|AAN05100.1| 353|Homo sapiens paraneoplastic antigen
protein.
Length = 353
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 8 PAADVIITLTRDTDAVPADNTIDEFENLYKDVSTSRAAEFETL 136
PAADVI L + A+ + E ++ V +SR A+ + L
Sbjct: 209 PAADVIRILKSNNPAITTAECLKALEQVFGSVESSRDAQIKFL 251
>AF037364-1|AAD13810.3| 353|Homo sapiens paraneoplastic neuronal
antigen MA1 protein.
Length = 353
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 8 PAADVIITLTRDTDAVPADNTIDEFENLYKDVSTSRAAEFETL 136
PAADVI L + A+ + E ++ V +SR A+ + L
Sbjct: 209 PAADVIRILKSNNPAITTAECLKALEQVFGSVESSRDAQIKFL 251
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,066,341
Number of Sequences: 237096
Number of extensions: 421022
Number of successful extensions: 972
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 76,859,062
effective HSP length: 73
effective length of database: 59,551,054
effective search space used: 1369674242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -