Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30049X
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 143 2e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 142 2e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 142 2e-35
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 28 1.0
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 28 1.0
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 1.3
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.3
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 3.1
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 5.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 5.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 5.4
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 7.1
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 143 bits (346), Expect = 2e-35
Identities = 63/89 (70%), Positives = 73/89 (82%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
KKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+
Sbjct: 6 KKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAIL 65
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDVSQLRR 269
QRLIKVDGKVRTD+T+P GFMDV + +
Sbjct: 66 MQRLIKVDGKVRTDSTFPTGFMDVISVEK 94
Score = 142 bits (345), Expect = 2e-35
Identities = 64/84 (76%), Positives = 73/84 (86%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 436
S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYP
Sbjct: 91 SVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
Query: 437 DPLIKVNDSIQLDIATTKIMDFIK 508
DPLIKVND+I+L++ T KI FIK
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIK 174
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 142 bits (345), Expect = 2e-35
Identities = 64/84 (76%), Positives = 73/84 (86%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 436
S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYP
Sbjct: 91 SVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
Query: 437 DPLIKVNDSIQLDIATTKIMDFIK 508
DPLIKVND+I+L++ T KI FIK
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIK 174
Score = 141 bits (342), Expect = 5e-35
Identities = 62/89 (69%), Positives = 73/89 (82%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
KKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+
Sbjct: 6 KKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAIL 65
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDVSQLRR 269
QRLI+VDGKVRTD+T+P GFMDV + +
Sbjct: 66 MQRLIQVDGKVRTDSTFPTGFMDVISVEK 94
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 142 bits (345), Expect = 2e-35
Identities = 63/84 (75%), Positives = 71/84 (84%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
KKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+
Sbjct: 6 KKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAIL 65
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDV 254
QRLIKVDGKVRTD+T+P GFMDV
Sbjct: 66 MQRLIKVDGKVRTDSTFPTGFMDV 89
Score = 141 bits (342), Expect = 5e-35
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 436
S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYP
Sbjct: 91 SVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
Query: 437 DPLIKVNDSIQLDIATTKIMDFIK 508
DPLIKVND+I+L++ T KI FIK
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIK 174
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 27.9 bits (59), Expect = 1.0
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +3
Query: 111 LPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDTTYPAGFM--DVSQLRRLMNCF 284
LPLV ++ + + N L IV Q L+ V Y + ++S+++ L+NCF
Sbjct: 376 LPLVKQYDHKFRNLYSPNIFLSIV-QALVFCGDMVNIQRWYNMSRVNSELSRIKHLLNCF 434
Query: 285 V*SMMLRADSQSTVSPLRRLSTSCVK 362
+ S + D + LR L +K
Sbjct: 435 LNSSTVSLDVSMVLELLRDLKKKKIK 460
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = -3
Query: 242 SSRISSVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 87
SS+ ++ P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = +2
Query: 239 WIYGCFSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK-RVATGPKNVPYLVTHD 415
W C +I + F + G + +I K LC V T PKN Y+V
Sbjct: 32 WCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHTDPKNTEYIVASG 91
Query: 416 GR 421
GR
Sbjct: 92 GR 93
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 2.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 448 QSQRFHPVRHRNYED 492
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 415 WPHHPLPRPTYQSQR 459
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 418 PHHPLPRPTYQSQRFHPVRHRNYEDY 495
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 343 SLLRGDTVDCESALNIID*TKQ 278
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRTIR 430
S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H ++
Sbjct: 1721 SLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEMLK 1779
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 421 HHPLPRPTYQSQRFHPVR 474
H PLPRP Q + PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,080
Number of Sequences: 5004
Number of extensions: 49089
Number of successful extensions: 138
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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