Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30049X
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             166   9e-42
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   3.2  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      27   9.6  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  166 bits (404), Expect = 9e-42
 Identities = 75/84 (89%), Positives = 79/84 (94%)
 Frame = +3

Query: 3   KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
           KKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIV
Sbjct: 430 KKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIV 489

Query: 183 KQRLIKVDGKVRTDTTYPAGFMDV 254
           KQRLIK+DGKVRTDTTYPAGFMDV
Sbjct: 490 KQRLIKIDGKVRTDTTYPAGFMDV 513



 Score =  130 bits (315), Expect = 5e-31
 Identities = 58/88 (65%), Positives = 71/88 (80%)
 Frame = +2

Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 436
           +I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RTIRYP
Sbjct: 515 TIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYP 574

Query: 437 DPLIKVNDSIQLDIATTKIMDFIKLSLG 520
           DP IKVND++ +DI T K++D+IK   G
Sbjct: 575 DPNIKVNDTVVIDIKTGKVIDYIKFDTG 602


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +2

Query: 131 EES--SEVCFDRKRSPENCE 184
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -1

Query: 208 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 92
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 317 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 418
           I  +TP+    K C+V R++TGP    +++  +G
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEG 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,257,083
Number of Sequences: 59808
Number of extensions: 382418
Number of successful extensions: 975
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)