Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30049X
(535 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 129 1e-30
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 29 2.1
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 29 2.1
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 29 2.8
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas... 28 3.7
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 3.7
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 27 6.4
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 27 8.5
Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical p... 27 8.5
Z81521-3|CAB04225.1| 353|Caenorhabditis elegans Hypothetical pr... 27 8.5
AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid deplete... 27 8.5
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 129 bits (311), Expect = 1e-30
Identities = 61/94 (64%), Positives = 70/94 (74%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
KKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E KI+
Sbjct: 5 KKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKIL 64
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDVSQLRRLMNCF 284
QR+++VDGKVRT +P GFMDV + R F
Sbjct: 65 TQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98
Score = 113 bits (273), Expect = 6e-26
Identities = 52/88 (59%), Positives = 64/88 (72%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 436
+IE+TNE FR++YD KGR+ +HRI EA +KLCKVK V T K VP L T DGRTIRYP
Sbjct: 90 AIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYP 149
Query: 437 DPLIKVNDSIQLDIATTKIMDFIKLSLG 520
DP +KVND+I +I+T KI D +K G
Sbjct: 150 DPHVKVNDTIVFNISTQKITDSVKFEPG 177
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +2
Query: 305 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 436
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 263 QLRNIHKSSRISSVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 117
Q +N H++S+ PN+ N Y+ FQ Q + + PQ+ +Q
Sbjct: 207 QQQNYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 255
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 263 QLRNIHKSSRISSVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 117
Q +N H++S+ PN+ N Y+ FQ Q + + PQ+ +Q
Sbjct: 229 QQQNYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 277
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 421 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 504
HH PTY F+P H++Y+ + L+
Sbjct: 32 HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59
>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 1 protein.
Length = 2500
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Frame = +3
Query: 90 PHKLRECLPLVIFLRNRLKYALT---GNEVLKIVKQRLIKVDGKVRTDTTYPAGFMDVSQ 260
PH V +R ++ ++ N ++ +V + + R + T P +DV
Sbjct: 1711 PHLSNSAFQTVCLMRELMQNVISTKDANHLMILVTRSTEHLLHAYRLEGTPPKNLLDVEW 1770
Query: 261 LRRLMNCFV*SMMLRADSQSTVSPLRRLSTSCVK 362
RRL + F+ M L + V RR++T+ ++
Sbjct: 1771 ARRLRDLFIGLMRLLQNYFPLVELSRRITTAIMQ 1804
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -2
Query: 462 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 298
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 93 HKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDTTY 233
H+ +C + LKY E +I+K+R+ K+ K + +T Y
Sbjct: 167 HQKAQCRDITAITEKLLKYQKDDPEKRRILKERMEKLIRKYKDETFY 213
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 94 WGPVDGLGAYTPPSLSNIHALGAF 23
+GP+ GLG +T P+L + G F
Sbjct: 75 FGPIPGLGNFTLPTLGTLPGFGNF 98
>Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical
protein Y69H2.10a protein.
Length = 572
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 94 WGPVDGLGAYTPPSLSNIHALGAF 23
+GP+ GLG +T P+L + G F
Sbjct: 75 FGPIPGLGNFTLPTLGTLPGFGNF 98
>Z81521-3|CAB04225.1| 353|Caenorhabditis elegans Hypothetical
protein F32A11.3 protein.
Length = 353
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 74 ETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTP 193
+ V + P+VA + + +E S CF RK+ E E P
Sbjct: 145 QQVQQKPKVAPKMLHKMYDDEESGYCFARKKDVEQEEEVP 184
>AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid depleted
protein 5 protein.
Length = 176
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 371 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 499
++TG N+P +HD + + D L K + + +++ + MD
Sbjct: 20 LSTGKDNLPVTRSHDAKKVELNDILDKPSQKTPVKVSSDETMD 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,264,918
Number of Sequences: 27780
Number of extensions: 280428
Number of successful extensions: 854
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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