Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30047
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1019 - 7971606-7972077,7972550-7972752                           29   3.0  
07_01_1028 + 8893840-8893893,8895932-8896033,8896105-8896254,889...    28   7.0  

>06_01_1019 - 7971606-7972077,7972550-7972752
          Length = 224

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 370 SAKFKH*NYFISGVSAELCMFYWKIKLKIYNKCDF 266
           SAK  +   F+ GV   +  F+WK K++  NKC F
Sbjct: 149 SAKSAYMIQFVGGVQDNMSDFFWKAKVE--NKCKF 181


>07_01_1028 +
           8893840-8893893,8895932-8896033,8896105-8896254,
           8896440-8896454
          Length = 106

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 139 YNKNCSGNYYTKINVSILRLVSINQFPNI*IRRFKKMSNCH 17
           YNK C G   TK++ ++   + +  +P++ I    KM  CH
Sbjct: 50  YNKGCDGLERTKLDKNMHETMKVQSWPHVGI---TKMPPCH 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,303,838
Number of Sequences: 37544
Number of extensions: 208243
Number of successful extensions: 303
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)