Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30047
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77667-7|CAB01238.2|  534|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate recep...    27   8.4  
AF318609-1|AAK01097.1|  425|Caenorhabditis elegans ionotropic gl...    27   8.4  
AC024881-3|AAK71413.1|  306|Caenorhabditis elegans Serpentine re...    27   8.4  

>Z77667-7|CAB01238.2|  534|Caenorhabditis elegans Hypothetical
           protein M04B2.5 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -3

Query: 291 LKFTISAILQNFYFVRKT*NT*IFKYDCYYTLKTSNISFFNYFMFSF 151
           +KF++S ++   Y +  T    IF+YD       S ISFF+ F FSF
Sbjct: 327 IKFSVSVMI--LYLLSAT--MFIFEYDELSGPPDSGISFFHAFYFSF 369


>U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 5 protein.
          Length = 932

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 505 PVVLANLYSFFNTTIYIQLFIIK 573
           P+V++N YSF+NT  Y+   ++K
Sbjct: 620 PIVMSNNYSFWNTVWYVLSTMLK 642


>AF318609-1|AAK01097.1|  425|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-5 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 505 PVVLANLYSFFNTTIYIQLFIIK 573
           P+V++N YSF+NT  Y+   ++K
Sbjct: 180 PIVMSNNYSFWNTVWYVLSTMLK 202


>AC024881-3|AAK71413.1|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein6 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +1

Query: 406 YHKASIFKFVKQILNKKSPEIFPLKAHQ*LLKFPVVLANLYSFFNTTIYIQLFIIKPVVF 585
           Y K SI+ F + +  +    +F +     ++KFP      Y  F+T  YI L +I PV+F
Sbjct: 82  YTKVSIYTFFETV--QAMIMLFLVVDILVIVKFP----RFYHTFSTEWYIILALILPVIF 135

Query: 586 KNLYF 600
             ++F
Sbjct: 136 GIIFF 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,467,235
Number of Sequences: 27780
Number of extensions: 245709
Number of successful extensions: 531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)