Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30047
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.9  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 148 NK*YNKNCSGNYYTKINV 95
           N  YN NC   YY  IN+
Sbjct: 344 NNNYNNNCKKLYYNIINI 361


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +2

Query: 326 RDTGNKIVLVFEFSRYNKY----ILTDIPTCIIRRQFSNSSNKFLTKSRRKYSPSRPI 487
           RD  + + +++  ++ +KY    ILT +P  I   ++    +KF++K  +K   ++ I
Sbjct: 73  RDINDVLNVLYFINKNDKYEENTILTTMPLLINVVKYLGGKHKFISKKIKKTMENKDI 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,957
Number of Sequences: 438
Number of extensions: 3627
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)