Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30045
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 1.9
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin... 27 1.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 3.3
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 4.3
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 26 5.7
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 7.5
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 9.9
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 9.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.9
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 25 9.9
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 305 LKSVREHRRYPGRLYDTQIIASDLVLTFEVLPL 403
++ V++ +P L +TQII SDL+ + EV P+
Sbjct: 331 IEGVKDFTEFPD-LEETQIIYSDLIASSEVSPI 362
>SPBPB21E7.04c ||SPAPB21E7.04c,
SPAPB21E7.04c|S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 281
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 496 PESVKLISEAVATEKDVQKLVAPVNSVQFMSQWKYL 389
PE VK + ++ K+ V+ VN QF+ +W +
Sbjct: 219 PEYVKYVQGSLDYRKEYDSTVSNVNGPQFIGKWNII 254
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 633 LGKTTEKLLSHLNLIENEVNHPDETVNN-ESNKTGIVNDKGAGTY 502
LGK +E LL+ L+ + ++ D TVNN ES + K AG Y
Sbjct: 1136 LGKESEHLLNELDDTHSSLSTVDFTVNNTESLINSLKIFKKAGCY 1180
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.2 bits (55), Expect = 4.3
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = -1
Query: 514 CRD--ISSPESVK-LISEAVATEKDVQKLVAP-VNSVQFMSQWKYLKGQDEVRSYYLSII 347
CRD + +PE VK L+ EA ++ LV + V + + + + Y+ I
Sbjct: 745 CRDNNVYNPEKVKNLLKEAKLADQLPLILVCDRYDFVNDLVFYLFRNNMFQFIEIYVQRI 804
Query: 346 EPSRIPSMFANALESDVLSELIRAL 272
PS+ P + L+ D EL++ L
Sbjct: 805 NPSKTPQVVGALLDIDCDEELVQNL 829
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3
Query: 303 LSRAFANIDGIRDGS 347
LS+AFANI GIR+G+
Sbjct: 208 LSKAFANILGIREGT 222
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 431 RHQFLHILLRGHCLRYQLHRLRTRY 505
R + I +CL YQ RL TRY
Sbjct: 374 RQSYGEITSASNCLEYQARRLLTRY 398
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 365 ASDLVLTFEVLPLGHELHTIDGRHQFLHILLRGHCLRYQLHRLRTRYVPAPLS 523
+SD+V TF+ G LH D Q H Q H L R +P P++
Sbjct: 102 SSDIVATFDGKDFGSNLHVDDTLDQ-----QWAHFAGKQQHPLEPREIPFPVT 149
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 299 VALKSVREHRRYPGRLYDTQIIASDLVLTFEVLPLGHELH 418
V++ + +EH Y GR D Q +D +E+ P + H
Sbjct: 562 VSVSTKKEHLSYDGRKRDPQYSNADGSCLWEIHPFLNHFH 601
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 433 PPVSAHPSPWPLPPISTSPT 492
PP S + P+PP STS T
Sbjct: 139 PPTSTSSTSIPIPPTSTSST 158
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 433 PPVSAHPSPWPLPPISTSPT 492
PP S + P+PP STS T
Sbjct: 196 PPTSTSSTSIPIPPTSTSST 215
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 433 PPVSAHPSPWPLPPISTSPT 492
PP S + P+PP STS T
Sbjct: 252 PPTSTSSTSIPIPPTSTSST 271
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = -2
Query: 615 KLLSHLNLIENEVNHPDETVNNESNK 538
KL+ HL+ I ++ N+P+ V+++S++
Sbjct: 183 KLVVHLDRIRSQDNNPEAKVSHDSDR 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,354
Number of Sequences: 5004
Number of extensions: 46029
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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