Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30045
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21278| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   5e-06
SB_42351| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               28   7.9  
SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3)                   28   7.9  

>SB_21278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = -1

Query: 430 PVNSVQFMSQWKYLKGQDEVRSY-YLSIIEPSRIPSMFANALESDVLSELIRALH 269
           P  SVQF S WK LKG    + + YL  I+P   P +   ++ESDVL+ +++ LH
Sbjct: 200 PKTSVQFQSDWKVLKGGPPEQLFDYLRKIKPEMYPKLLQQSIESDVLTGMLQVLH 254



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -3

Query: 218 LTQVKRFSALAMFLSATDK 162
           +TQVKRFS   MFLS  DK
Sbjct: 271 ITQVKRFSMAVMFLSPKDK 289


>SB_42351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 618 EKLLSHLNLIENEVNHPDETVNNESNKTGIVND 520
           EKL+S+ N+ EN  N+P     + + KTG  +D
Sbjct: 164 EKLISYCNIQENGTNYPKIEFMSGTKKTGPASD 196


>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1829

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -1

Query: 472  EAVATEKDVQKLVAPVNSVQFMSQWKYLKGQDEVRSYYLSIIEPSRIPSMFANALESDVL 293
            ++VAT+++ +KLV  + ++     ++  K     R    SI    R PSM    L  D L
Sbjct: 1313 KSVATQEEAKKLVPDLTTLLARGGFRLTKWMSNSREVVSSIPNDERAPSMKNRDLNLDCL 1372


>SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3)
          Length = 169

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -2

Query: 342 RPGY--RRCSRTLLRATYCRSSSARCTTTRPVPPQNRRGLPHGAHPGQEV 199
           RP Y  RR S    +  Y      R + TRP PP + R L HG  P   V
Sbjct: 92  RPPYDERRVSENRPKPPY---DDRRTSETRPRPPYDDRDLSHGPPPRYSV 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,300,942
Number of Sequences: 59808
Number of extensions: 370453
Number of successful extensions: 1469
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)