Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30045
         (673 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC056415-1|AAH56415.1|  631|Homo sapiens RPAP3 protein protein.        48   2e-05
AK025561-1|BAB15170.1|  665|Homo sapiens protein ( Homo sapiens ...    48   2e-05
AK124189-1|BAC85798.1|  282|Homo sapiens protein ( Homo sapiens ...    30   6.6  

>BC056415-1|AAH56415.1|  631|Homo sapiens RPAP3 protein protein.
          Length = 631

 Score = 48.4 bits (110), Expect = 2e-05
 Identities = 21/55 (38%), Positives = 32/55 (58%)
 Frame = -1

Query: 430 PVNSVQFMSQWKYLKGQDEVRSYYLSIIEPSRIPSMFANALESDVLSELIRALHD 266
           P NS Q  S ++ LK   ++   YL  IEPS  P +F   L+ DV +++++ LHD
Sbjct: 512 PANSFQLESDFRQLKSSPDMLYQYLKQIEPSLYPKLFQKNLDPDVFNQIVKILHD 566



 Score = 30.3 bits (65), Expect = 6.6
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -3

Query: 227 LTALTQVKRFSALAMFLSATDKRHLKNLLEYCRNEEKCSEQDIAELTEKY 78
           L  L+++KRF    MF+S T+K+  + L  +  ++    +  + EL ++Y
Sbjct: 581 LQRLSELKRFDMAVMFMSETEKKIARALFNHI-DKSGLKDSSVEELKKRY 629


>AK025561-1|BAB15170.1|  665|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21908 fis, clone HEP03830. ).
          Length = 665

 Score = 48.4 bits (110), Expect = 2e-05
 Identities = 21/55 (38%), Positives = 32/55 (58%)
 Frame = -1

Query: 430 PVNSVQFMSQWKYLKGQDEVRSYYLSIIEPSRIPSMFANALESDVLSELIRALHD 266
           P NS Q  S ++ LK   ++   YL  IEPS  P +F   L+ DV +++++ LHD
Sbjct: 546 PANSFQLESDFRQLKSSPDMLYQYLKQIEPSLYPKLFQKNLDPDVFNQIVKILHD 600



 Score = 30.3 bits (65), Expect = 6.6
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -3

Query: 227 LTALTQVKRFSALAMFLSATDKRHLKNLLEYCRNEEKCSEQDIAELTEKY 78
           L  L+++KRF    MF+S T+K+  + L  +  ++    +  + EL ++Y
Sbjct: 615 LQRLSELKRFDMAVMFMSETEKKIARALFNHI-DKSGLKDSSVEELKKRY 663


>AK124189-1|BAC85798.1|  282|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42195 fis, clone THYMU2033787. ).
          Length = 282

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 433 PPVSAHPSPWPLPPISTSPTQD*ICPC 513
           PP  + P PWP   +  SP     CPC
Sbjct: 67  PPTVSFPPPWPTHHVLPSPVAHPPCPC 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,319,004
Number of Sequences: 237096
Number of extensions: 1762786
Number of successful extensions: 6216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6208
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)