Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30045
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56440.1 68414.m06491 serine/threonine protein phosphatase-re...    45   4e-05
At4g30790.1 68417.m04362 expressed protein                             31   0.70 
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    30   1.6  
At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family...    29   2.1  
At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger) fa...    29   3.7  
At4g26640.2 68417.m03839 WRKY family transcription factor contai...    28   4.9  
At4g26640.1 68417.m03838 WRKY family transcription factor contai...    28   4.9  
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f...    28   4.9  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    28   6.5  
At1g51870.1 68414.m05847 protein kinase family protein contains ...    28   6.5  
At1g01780.1 68414.m00097 LIM domain-containing protein similar t...    28   6.5  
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ...    27   8.6  
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro...    27   8.6  

>At1g56440.1 68414.m06491 serine/threonine protein
           phosphatase-related similar to SP|Q60676
           Serine/threonine protein phosphatase 5 (EC 3.1.3.16)
           (PP5) (Protein phosphatase T) (PPT) Mus musculus,
           Tetratricopeptide Repeats Of Protein Phosphatase 5 [Homo
           sapiens] GI:3212250; contains Pfam profile: PF00515: TPR
           Domain
          Length = 476

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 19/66 (28%), Positives = 37/66 (56%)
 Frame = -1

Query: 469 AVATEKDVQKLVAPVNSVQFMSQWKYLKGQDEVRSYYLSIIEPSRIPSMFANALESDVLS 290
           ++A  +  + +  P ++ +F + W+   G   +RS  L +  PS +P +F NAL S VL 
Sbjct: 340 SLAMTEASKNIKTPKSAYEFENSWRSFSGDSALRSQLLKVTTPSSLPQIFKNALTSPVLV 399

Query: 289 ELIRAL 272
           ++I+ +
Sbjct: 400 DIIKCV 405



 Score = 31.5 bits (68), Expect = 0.53
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -3

Query: 230 YLTALTQVKRFSALAMFLSATDKRHLKNLLE--YCRNEEKCSEQDIAELTEK 81
           Y+  LT+V RF+ L M L++T+K  L  + E  +C    K +  + AE+ +K
Sbjct: 419 YIENLTKVPRFNMLVMCLTSTEKNELLKIWEDVFC---NKATPMEYAEVLDK 467


>At4g30790.1 68417.m04362 expressed protein
          Length = 1148

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 161  RHLKNLLEYCRNEEKCSEQDIAELTEKYEL 72
            +H + LLE C+N E  SEQ   +L EK EL
Sbjct: 963  KHREELLEKCQNLEATSEQTRKDLEEKKEL 992


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
            identical to ubiquitin-protein ligase 1 [Arabidopsis
            thaliana] GI:7108521; E3, HECT-domain protein family;
            similar to GI:7108521, GB:AAF36454 from [Arabidopsis
            thaliana]
          Length = 3891

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +2

Query: 545  DSLLTVSSG*FTSFSIKFR*DNSFSVVLPNCIS*IGIVLSCLL 673
            D ++TV+ G  T F++K   ++   ++ P CIS + +VLS +L
Sbjct: 1655 DGIVTVAIGILTDFNLKS--ESETEILAPKCISALLLVLSMML 1695


>At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 418

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 472 EAVATEKDVQKLVAPVNSVQFMSQWKYLKGQD 377
           +AV  EKD+  L  P    +  S WKY  GQ+
Sbjct: 41  QAVRNEKDMDSLNVPRKYREMKSFWKYYSGQE 72


>At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 634

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -3

Query: 410 HVPVEVPQRSRRGQKLLFEYH---RAVPDTVDVRERS*ERRTVGAHPRAARPRAQFRHRT 240
           H PV  P R +R +      H   R VP+  D RE S  R   G  PRA+   A FR RT
Sbjct: 29  HSPV-APLRYQREEYRNHHLHGRARPVPEIGDNRESSDTRTESGHRPRASVGNALFR-RT 86

Query: 239 V 237
           V
Sbjct: 87  V 87


>At4g26640.2 68417.m03839 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 557

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -1

Query: 397 KYLKGQDEVRSYYLSIIEPSRIPSMFANALESDVLSELIRALHDH 263
           K++KG +  RSYY        +  +F  + +  +   + +  HDH
Sbjct: 222 KHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDH 266


>At4g26640.1 68417.m03838 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 485

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -1

Query: 397 KYLKGQDEVRSYYLSIIEPSRIPSMFANALESDVLSELIRALHDH 263
           K++KG +  RSYY        +  +F  + +  +   + +  HDH
Sbjct: 150 KHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDH 194


>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 672

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 606 SHLNLIENEVNHPDETVNNESNKTGIVNDKGAGT 505
           S+L   E++     +T+N ESN+ G V   G GT
Sbjct: 485 SNLRSEESQDEKKTDTLNTESNQDGSVESSGVGT 518


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
            identical to ubiquitin-protein ligase 2 [Arabidopsis
            thaliana] GI:7108523; E3, HECT-domain protein family;
            similar to ubiquitin-protein ligase 2 GI:7108523 from
            [Arabidopsis thaliana]
          Length = 3658

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +2

Query: 545  DSLLTVSSG*FTSFSIKFR*DNSFSVVLPNCIS*IGIVLSCLL 673
            D ++ V+ G  T F++K   ++   ++ P CIS + +VLS +L
Sbjct: 1447 DGIVAVAIGILTDFNLKS--ESETDILAPKCISALLLVLSMML 1487


>At1g51870.1 68414.m05847 protein kinase family protein contains
           Serine/Threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 837

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 408 MNCTLLTGATSFC-TSFSVATASDINFTDSGL 500
           ++C L+   T++  TS ++   SD N+TDSGL
Sbjct: 32  LDCGLVPKETTYVETSTNITYKSDANYTDSGL 63


>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 205

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +1

Query: 70  HSSYFSVSSAISCSLHFSSFLQYSNRFFRCRLSVAERNIASAENL 204
           HSSY S+ S + C  HF+        +     +   R  AS   L
Sbjct: 140 HSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRTASGNTL 184


>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
           similar to potato PCP1 zinc finger protein, GenBank
           accession number X82328 contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 402

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 282 SARCTTTRPVPPQNRRGLPHGAHPGQEVL 196
           S+ CT T    P+ +RGLP    P  EV+
Sbjct: 41  SSVCTHTETHKPKKKRGLPGNPDPDAEVI 69


>At3g05470.1 68416.m00599 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 884

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 261 RPVPPQNRRGLPHGAHP 211
           RP+PP  RR LP   HP
Sbjct: 122 RPIPPHLRRPLPQRTHP 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,696,315
Number of Sequences: 28952
Number of extensions: 255442
Number of successful extensions: 1131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)