Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30044
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099000-1|AAK71876.1|  334|Caenorhabditis elegans Serpentine re...    28   2.6  
AF024501-2|AAB70367.2|  334|Caenorhabditis elegans Serpentine re...    27   4.5  
Z68117-4|CAA92180.1|  589|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF025454-8|AAK68370.1|  334|Caenorhabditis elegans Serpentine re...    27   6.0  
Z49966-7|CAD57696.1|  125|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U80842-5|AAK71419.2|  305|Caenorhabditis elegans Serpentine rece...    26   7.9  
AF016435-5|AAB65881.1|  538|Caenorhabditis elegans Hypothetical ...    26   7.9  

>AF099000-1|AAK71876.1|  334|Caenorhabditis elegans Serpentine
           receptor, class i protein60 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 204 VAFSTPRWITVYFLDLELI*IMKSKITYDVIICRS-KLSNF 323
           + FS P W+T Y+  + +I I+    +  +++ RS K+ NF
Sbjct: 4   IDFSIPYWLTTYYHVIGVISILFDSFSIYLVLFRSDKIDNF 44


>AF024501-2|AAB70367.2|  334|Caenorhabditis elegans Serpentine
           receptor, class i protein63 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 204 VAFSTPRWITVYFLDLELI-*IMKSKITYDVIICRSKLSNF 323
           + FSTP W+  Y+  + +I  I  S   Y ++   SK+ NF
Sbjct: 4   IDFSTPHWLITYYHVIGVISLIFDSFSIYLILFKSSKIDNF 44


>Z68117-4|CAA92180.1|  589|Caenorhabditis elegans Hypothetical
           protein F45E6.2 protein.
          Length = 589

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +3

Query: 78  GRVLTVFDTRPLLAANTLTRAPL---PTREIN-CSVYV*NYPM*VRVAFSTPRWITVYFL 245
           GRV+T  D+ P+  A   T+ P+   P    N C +Y  N    +RV     RW+ V+  
Sbjct: 369 GRVITYEDSAPV--AKIPTQQPIHNYPNSTQNDCDMYKLNATETIRVNNDIERWVQVHSF 426

Query: 246 D 248
           D
Sbjct: 427 D 427


>AF025454-8|AAK68370.1|  334|Caenorhabditis elegans Serpentine
           receptor, class i protein62 protein.
          Length = 334

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 204 VAFSTPRWITVYFLDLELI*IMKSKIT-YDVIICRSKLSNF 323
           + F+TP W+  Y+  + +I ++    + Y ++   SK+ NF
Sbjct: 4   IDFATPNWLITYYHVIGIISLLFDSFSIYLILFKSSKIDNF 44


>Z49966-7|CAD57696.1|  125|Caenorhabditis elegans Hypothetical
           protein F35C11.7 protein.
          Length = 125

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 197 SESGVLYTEVDNCLFPRPRAYLNNEIKNYL 286
           S +GV Y  +D C +PR     N  + +YL
Sbjct: 83  SSTGVQYCNLDICRYPRTTCCNNFRVTSYL 112


>U80842-5|AAK71419.2|  305|Caenorhabditis elegans Serpentine
           receptor, class i protein50 protein.
          Length = 305

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 198 VRVAFSTPRWITVYFLDLELI*IMKSKITYDVIICRS-KLSNF 323
           + + F+TP W+  Y+  + LI ++ +  T  +II +S KL NF
Sbjct: 1   MNIDFNTPTWLINYYNVVGLISLLINIHTMLLIIFKSDKLGNF 43


>AF016435-5|AAB65881.1|  538|Caenorhabditis elegans Hypothetical
           protein F59D6.6 protein.
          Length = 538

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 18  LTNPNLKKTNLR*TAEALS-GGRVLTVFDTRP 110
           ++NPNLKK NL   +  L+ G R+  V D  P
Sbjct: 433 ISNPNLKKANLPEVSNILARGKRIGIVQDNHP 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,033,305
Number of Sequences: 27780
Number of extensions: 121629
Number of successful extensions: 239
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)