Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30043
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    97   2e-21
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    41   2e-04
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    40   3e-04
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.8  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   3.7  
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   6.5  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 41/75 (54%), Positives = 56/75 (74%)
 Frame = +1

Query: 508 LAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFS 687
           +A DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT   LA+T V   D+   +
Sbjct: 153 IASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELA 212

Query: 688 KVVEAIKTNFNERYE 732
            +V A+  NF+ +Y+
Sbjct: 213 SIVSAVDANFSAKYD 227



 Score = 68.9 bits (161), Expect = 7e-13
 Identities = 29/49 (59%), Positives = 39/49 (79%)
 Frame = +1

Query: 127 NTLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLHVV*KCP 273
           N LF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L++  K P
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVP 72



 Score = 58.8 bits (136), Expect = 8e-10
 Identities = 34/83 (40%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +3

Query: 258 RLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXXXXXX 434
           RLKVPP I QF +TLDK TA  +FK+L KYRPET                          
Sbjct: 68  RLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSK 127

Query: 435 RPNTIRSGTNTVTKLVEKKKAHL 503
           +P  ++ G N V  L+E KKA L
Sbjct: 128 KPYNVKYGLNHVVALIEAKKAKL 150


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 24/78 (30%), Positives = 36/78 (46%)
 Frame = +1

Query: 508 LAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFS 687
           LA D+ P++++  +P LC    VPY     K  LG   + K  T   +  V  G +   S
Sbjct: 75  LAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMI-VPGGKKKDMS 133

Query: 688 KVVEAIKTNFNERYEGAP 741
           K VE  K ++ E  +  P
Sbjct: 134 K-VEEYKESYEEIIKEVP 150


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 508 LAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 612
           +A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 53  MAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 738 SSFVALVEVRLDGFHDLREGGAVTRLHIC*SQACACLAVYKCTEAGLAL 592
           ++ + L++ ++DGFHD+ +G    RL +  +    C+    C E+ L+L
Sbjct: 308 NTILQLLDSKVDGFHDIFDGRLFIRLVVDAALGEFCIPDI-CRESALSL 355


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 90   IGGQKG*AQEDREYSLREEAKELCHWSGHSAN 185
            +G  K   QED  YSL E+AK    W   SAN
Sbjct: 1752 VGNSKPLMQEDIFYSLIEDAKTRGVWRDLSAN 1783


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 427 HQRGPTPSDPAQT-QSPSWSRRRRRTCGLAHDV 522
           H+    P +P  + + P  +R+R+++ GL HD+
Sbjct: 45  HKSSVGPKEPKSSLEKPKANRKRKQSYGLLHDI 77


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 468  LCLCRIGWC 442
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,628
Number of Sequences: 5004
Number of extensions: 58873
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)