Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30043
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 142 2e-34
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 96 2e-20
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 71 9e-13
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 71 9e-13
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 42 6e-04
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 41 8e-04
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.030
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 29 2.6
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 29 2.6
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 29 2.6
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 29 2.6
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 29 2.6
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 29 2.6
Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical pr... 29 4.6
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 29 4.6
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 29 4.6
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 8.0
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 142 bits (344), Expect = 2e-34
Identities = 79/203 (38%), Positives = 108/203 (53%), Gaps = 1/203 (0%)
Frame = +1
Query: 127 NTLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLHVV*KCPLRSTNLPRHWT 306
N LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+L K P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 307 RLQLR-AFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQTQSPSWS 483
R AF + + +R T T +
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
Query: 484 RRRRRTCGLAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 663
RR + +AHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVN 209
Query: 664 SGDRASFSKVVEAIKTNFNERYE 732
D+++ +K+VE + NF+ER+E
Sbjct: 210 PEDKSALNKLVETVNNNFSERHE 232
Score = 72.5 bits (170), Expect = 3e-13
Identities = 35/83 (42%), Positives = 46/83 (55%)
Frame = +3
Query: 255 RRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXX 434
+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 73 KRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTK 132
Query: 435 RPNTIRSGTNTVTKLVEKKKAHL 503
RPNT+R G NT+T+LVE ++A L
Sbjct: 133 RPNTVRHGVNTITRLVETRRAQL 155
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 96.3 bits (229), Expect = 2e-20
Identities = 42/82 (51%), Positives = 60/82 (73%)
Frame = +1
Query: 487 RRRRTCGLAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 666
RR + +AHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 131 RRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNP 190
Query: 667 GDRASFSKVVEAIKTNFNERYE 732
D+++ +K+VE + NF+ER+E
Sbjct: 191 EDKSALNKLVETVNNNFSERHE 212
Score = 70.9 bits (166), Expect = 9e-13
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +1
Query: 127 NTLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLHVV*KCP 273
N LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+L K P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVP 78
Score = 60.9 bits (141), Expect = 9e-10
Identities = 35/83 (42%), Positives = 46/83 (55%)
Frame = +3
Query: 255 RRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXX 434
+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 73 KRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES--------------------TEVTK 112
Query: 435 RPNTIRSGTNTVTKLVEKKKAHL 503
RPNT+R G NT+T+LVE ++A L
Sbjct: 113 RPNTVRHGVNTITRLVETRRAQL 135
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 70.9 bits (166), Expect = 9e-13
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +1
Query: 127 NTLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLHVV*KCP 273
N LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+L K P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVP 181
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 255 RRLKVPPPINQFTQTLD 305
+RLKVPP INQF LD
Sbjct: 176 KRLKVPPTINQFRTALD 192
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 70.9 bits (166), Expect = 9e-13
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +1
Query: 127 NTLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLHVV*KCP 273
N LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+L K P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVP 181
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +3
Query: 255 RRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 359
+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 176 KRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = +1
Query: 484 RRRRRTCGLAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 663
R + C LA +V PI++ +P +C + +PY + + +LG V + + L
Sbjct: 82 RNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSILIFVKPS 141
Query: 664 SGDRASFSKVVEAIK 708
+ + +V EA++
Sbjct: 142 GDFKELYDEVAEALR 156
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 508 LAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDRAS 681
+A D +P+E++L LP LC VPY V+ K+ LG V R N S ++
Sbjct: 56 MAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQ 115
Query: 682 FSKVVEAIK 708
K+ E ++
Sbjct: 116 IQKIKEDVE 124
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -2
Query: 401 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 282
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 673 GHQTPHLLEPSM-CMSCGVQVHRGGTCP 593
GH++ EP C +CG Q HR CP
Sbjct: 251 GHRSAECPEPPRGCFNCGEQGHRSNECP 278
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 673 GHQTPHLLEPSM-CMSCGVQVHRGGTCP 593
GH++ EP C +CG Q HR CP
Sbjct: 462 GHRSAECPEPPRGCFNCGEQGHRSNECP 489
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 673 GHQTPHLLEPSM-CMSCGVQVHRGGTCP 593
GH++ EP C +CG Q HR CP
Sbjct: 462 GHRSAECPEPPRGCFNCGEQGHRSNECP 489
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 673 GHQTPHLLEPSM-CMSCGVQVHRGGTCP 593
GH++ EP C +CG Q HR CP
Sbjct: 251 GHRSAECPEPPRGCFNCGEQGHRSNECP 278
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 673 GHQTPHLLEPSM-CMSCGVQVHRGGTCP 593
GH++ EP C +CG Q HR CP
Sbjct: 251 GHRSAECPEPPRGCFNCGEQGHRSNECP 278
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 673 GHQTPHLLEPSM-CMSCGVQVHRGGTCP 593
GH++ EP C +CG Q HR CP
Sbjct: 462 GHRSAECPEPPRGCFNCGEQGHRSNECP 489
>Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical
protein R166.1 protein.
Length = 502
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = -2
Query: 737 APS*RSLKFVLMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPILRH 558
+P SL+F+ S+ EK + +P + L + +PL ++ TP+L
Sbjct: 116 SPKFPSLRFLSQLSSVAEKVS-TPSEAADTSSSSPSLNLNTTSSNSVPLAFKFSTPLLES 174
Query: 557 NAGRKRTSSMGS 522
A +++SS S
Sbjct: 175 LASDQQSSSTSS 186
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +1
Query: 439 PTPSDPAQTQSPSWSRRRRRTCGLAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 618
P+PS+P T P+ AHD DP++ + P + + +P+ V K R+ L
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAV--KERIATL 507
Query: 619 VHRKTCT 639
+ K T
Sbjct: 508 QNHKFAT 514
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +1
Query: 439 PTPSDPAQTQSPSWSRRRRRTCGLAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 618
P+PS+P T P+ AHD DP++ + P + + +P+ V K R+ L
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAV--KERIATL 507
Query: 619 VHRKTCT 639
+ K T
Sbjct: 508 QNHKFAT 514
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 274 LRSTNLPRHWTRLQLRA 324
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,395,852
Number of Sequences: 27780
Number of extensions: 354525
Number of successful extensions: 1057
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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