Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30040
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   1.6  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    27   2.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.9  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 254 YLNEHNLFNTFLDIPPGLVE 313
           +L EHN+FNTFL    G+V+
Sbjct: 584 FLLEHNIFNTFLVYNEGIVK 603


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = +3

Query: 213 LLTDSTTKLPVMTNI*TNTICSIHSLIFHQASLRARSEICKG*SKIDTFYLHNMCNRNKM 392
           ++  + T++P   N  +  + S+H +   Q+ + ARS    G   +  F  H   + +K 
Sbjct: 613 VIPHTQTEVP-SANDTSKQLASLHDMRKSQSPICARSATSAG---LPRFEYHT--SLSKS 666

Query: 393 ADQNSIPTNADSTRTPVPFY 452
            + +S P +  +T+TP P +
Sbjct: 667 LEHSSTPASLQATKTPSPSF 686


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 411  VSNFDPPFCFCCTYYVNKK 355
            VSN  PPF  C TY ++K+
Sbjct: 3032 VSNIGPPFPNCSTYILSKE 3050


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,211
Number of Sequences: 5004
Number of extensions: 41207
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)