Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30040
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein...    28   5.5  
At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat fam...    27   7.2  

>At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein
           similar to SP|O15173 Membrane associated progesterone
           receptor component 2 (Steroid receptor protein DG6)
           {Homo sapiens}; contains Pfam profile PF00173:
           Heme/Steroid binding domain
          Length = 245

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 407 RILIRHFVSVAHIM*IKSVYFRSAFTNFRSSSQRGL 300
           R L+  FV V  I+ + S+YFRS+F + +   Q+ L
Sbjct: 6   RFLLSPFVGVTFIVVLVSLYFRSSFKSPQHQYQKRL 41


>At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat family
           protein 
          Length = 454

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 502 VWRSWQHPNFIHSVQQK*NGTGVRVESALVGI 407
           +W     PN ++S+QQ  N T V V   + G+
Sbjct: 338 LWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGV 369


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,736,210
Number of Sequences: 28952
Number of extensions: 207979
Number of successful extensions: 393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)