Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30039
         (644 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q567K0 Cluster: Zgc:162082 protein; n=4; Danio rerio|Re...    33   5.9  
UniRef50_Q5BGG6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  

>UniRef50_Q567K0 Cluster: Zgc:162082 protein; n=4; Danio rerio|Rep:
           Zgc:162082 protein - Danio rerio (Zebrafish)
           (Brachydanio rerio)
          Length = 361

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -1

Query: 125 AAIGDCVAQSVLGIYLYFFVLPRSTGWPLQRTV 27
           A +G+CV +SVL +   +F LP+S G  L+R+V
Sbjct: 96  AKMGECVQKSVLTLCTVYFWLPKSQGVTLRRSV 128


>UniRef50_Q5BGG6 Cluster: Putative uncharacterized protein; n=1;
           Emericella nidulans|Rep: Putative uncharacterized
           protein - Emericella nidulans (Aspergillus nidulans)
          Length = 371

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +2

Query: 470 QRYVNLFNKRKYTLLLICILNYIISLNFKKCYWWIVE 580
           ++Y+ LF KR  +  L+ + +Y + L+F + +WW+ E
Sbjct: 301 EKYIELFRKRD-SFALVILAHYAVILHFLRRHWWMGE 336


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,377,704
Number of Sequences: 1657284
Number of extensions: 13436832
Number of successful extensions: 25937
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25930
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)