Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30039
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    28   1.3  
SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual         27   1.8  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    26   4.0  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    26   4.0  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   5.3  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   7.1  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   9.3  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 333 NIYMSVGLPTPVAGSLMM 386
           +IY SV +PTP+ GSL++
Sbjct: 293 DIYASVSIPTPLGGSLLL 310


>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 437 EGTGTASII*FQRYVNLFNKRKYTLLLICILNYIISLNFKKCYWWIV 577
           +G   A  I +QRY +LF K +   L+      I+   + +  WW++
Sbjct: 178 KGHDPAENIAYQRYYHLFRKGELNELVETAGGSILEHGYDRDNWWVI 224


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 179 YPLFHTIVLFSILIYKSTVVFMDVPY 256
           YP + T+    + + +S++ F  VPY
Sbjct: 267 YPTYQTVYQIGVFLSRSSISFFTVPY 292


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 85  IPRTDCATQ-SPIAAGIIFIFYHLLMTITSHYLSSLP 192
           + ++ C  Q SPI   ++++F   L+ +  +YL+ +P
Sbjct: 241 VTKSQCIAQMSPITYLVLWLFLSFLLALWIYYLTDIP 277


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 133 IFIFYHLLMTITSHYLSSLPHNSPLFYTNI*I-YSGFYG 246
           I+I+  LL+T     L + PH SP FY ++ I YS   G
Sbjct: 586 IWIYASLLVTCFVLALGNRPHGSPNFYLSMVIMYSILMG 624


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 479 VNLFNKRKYTLLLICILNYIISLNFKKCY 565
           V L  K K  LLL+ +L  ++ + FKK Y
Sbjct: 2   VRLPRKFKRVLLLVVLLTLVVFVRFKKQY 30


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 164 LRHI-IYPLFHTIVLFSILIYKSTVVFMDV 250
           LRH+ IYP FH +V  S+    + VV ++V
Sbjct: 180 LRHVFIYPRFHVVVAESLEKSPANVVELNV 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,495
Number of Sequences: 5004
Number of extensions: 61180
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)