Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30037
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    69   3e-13
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    69   3e-13
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    65   7e-12
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    27   2.2  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.9  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   8.9  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    25   8.9  

>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 69.3 bits (162), Expect = 3e-13
 Identities = 31/61 (50%), Positives = 46/61 (75%)
 Frame = +3

Query: 72  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 251
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 252 N 254
           N
Sbjct: 61  N 61


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 69.3 bits (162), Expect = 3e-13
 Identities = 31/61 (50%), Positives = 46/61 (75%)
 Frame = +3

Query: 72  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 251
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 252 N 254
           N
Sbjct: 61  N 61


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 64.9 bits (151), Expect = 7e-12
 Identities = 28/61 (45%), Positives = 45/61 (73%)
 Frame = +3

Query: 72  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 251
           +S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V+VEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60

Query: 252 N 254
           N
Sbjct: 61  N 61


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +3

Query: 54  RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALE 224
           R+ L+ +   E     S L+L +  DV  A++ E+IS IL  +      +W      AL 
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161

Query: 225 GINVRDLIT 251
           G+N++D I+
Sbjct: 162 GLNIKDAIS 170


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 36  GLRQLARSKLKMVSKAELACVYSAL 110
           G+ QL    + ++SKA+L C Y  L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 243 GHGH*CLPRLWRTDL 199
           G+G  CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 246 SGHGH*CLPRLWRTDLANMALHLQPPLSRWWKFSHQ 139
           SGHG    P L +  +  M   L+ PL + W++  +
Sbjct: 357 SGHGFKFFPILGKYSIGCMFRELEEPLLKKWRWKKE 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,566,057
Number of Sequences: 5004
Number of extensions: 25441
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)