Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30036
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   102   3e-23
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   101   6e-23
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   1.5  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    27   2.0  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    26   3.4  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    26   4.5  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   6.0  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   7.9  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   7.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.9  

>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  102 bits (245), Expect = 3e-23
 Identities = 51/84 (60%), Positives = 64/84 (76%), Gaps = 2/84 (2%)
 Frame = +1

Query: 262 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 441
           +PK+++AAL  T+ ARARIL AGGE+LT DQLALRAPTG  TVLV+G+++AREA RHFG 
Sbjct: 97  VPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFG- 155

Query: 442 APGAPRSHTKPYVRTKGH--EKAR 507
               P  H  PYVR++G   E+AR
Sbjct: 156 --FGPHKHKAPYVRSEGRKFERAR 177



 Score = 58.8 bits (136), Expect = 5e-10
 Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
 Frame = +2

Query: 5   HDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLA- 181
           H +K +R++  S+++               T+++FN+ +L+RLF S+ NRPPIS+S++A 
Sbjct: 9   HVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAA 68

Query: 182 -SHMKKPTREGLIAVVVGTVTND 247
            +  K  + +    VVVGTVT+D
Sbjct: 69  LTSRKSASSQNKTTVVVGTVTDD 91


>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  101 bits (243), Expect = 6e-23
 Identities = 51/84 (60%), Positives = 64/84 (76%), Gaps = 2/84 (2%)
 Frame = +1

Query: 262 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 441
           +PK++VAAL  T+ ARARIL AGGE+LT DQLALRAPTG  TVL++G+++AREA RHFG 
Sbjct: 97  VPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFG- 155

Query: 442 APGAPRSHTKPYVRTKGH--EKAR 507
               P  H  PYVR++G   E+AR
Sbjct: 156 --FGPHKHKAPYVRSEGRKFERAR 177



 Score = 62.9 bits (146), Expect = 3e-11
 Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
 Frame = +2

Query: 5   HDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLA- 181
           H RK +R++  S+++               T+++FN+ +L+RLF S+ NRPPIS+S++A 
Sbjct: 9   HVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAA 68

Query: 182 -SHMKKPTREGLIAVVVGTVTND 247
            +  K  + EG   V+VGTVT+D
Sbjct: 69  LTSRKSASLEGKTTVIVGTVTDD 91


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 345 SKNFSSSSQNACTSFFGNMKSSHRH 271
           SKN  SS  N+ TSFF ++ + +RH
Sbjct: 2   SKNSFSSMANSVTSFFQSLTTPNRH 26


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +2

Query: 323 LLEEKFLLLISWLFVLRLARRQY----WYKVSEMLVRQCVTLALLQEHRAL 463
           LL   F+ ++ ++  LRL   +     WY ++++L+ +C T   +   RAL
Sbjct: 134 LLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLLPECQTRIQIDSSRAL 184


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -3

Query: 477 IGFSVRARCS-WSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKS----KNFSSSSQNA 313
           +G S+ A    W RA +  C   I   L+ +  +    TK   +      KN SS++  A
Sbjct: 305 LGISLGASSGKWRRANIL-CYLIIGGCLFVFAFIYDTFTKRNAVLPPPFFKNRSSAALLA 363

Query: 312 CTSFF 298
           C+SFF
Sbjct: 364 CSSFF 368


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 256 YKIPKMTVAALHVTEKARARILAAGGEILTFDQL 357
           Y+IP + +  +  TE+A+ R     G+IL  D +
Sbjct: 63  YEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 498 FMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKN 337
           F+S G  IG ++             C++ I+++ Y Y LL    T S LI +++
Sbjct: 631 FLSFGITIGSALYGWMDKDATDADTCMSIIAVSPYWYILLIPIFTLSLLIVTQS 684


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 349 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 444
           D++  + P G K  + Q ++  R A++H+  A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 383 RQYWYKVSEMLVRQCVTLALLQEHRALTLN 472
           R  +YK SE ++ Q   + +LQ+  ALT N
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPN 133


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = -3

Query: 420 LTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVRLTSF 241
           LTS + T   +    S ST S    + + S +S+++  SF+ N+ +S   +      TSF
Sbjct: 641 LTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESS--SFYSNVTTSSSTVSTPPPTTSF 698

Query: 240 VTVPTTTAIKPS 205
            +  TT+ I  S
Sbjct: 699 PSTFTTSFITSS 710


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,521
Number of Sequences: 5004
Number of extensions: 49941
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)