Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30036
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 127 5e-30
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 126 2e-29
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 108 3e-24
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 29 2.0
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 28 4.6
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 6.1
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 27 8.1
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 127 bits (307), Expect = 5e-30
Identities = 61/89 (68%), Positives = 72/89 (80%), Gaps = 2/89 (2%)
Frame = +1
Query: 247 RETYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAV 426
+ Y++P M VAAL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +NAREAV
Sbjct: 97 KRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAV 156
Query: 427 RHFGPAPGAPRSHTKPYVRTKGH--EKAR 507
+HFGPAPG P S+TKPYVR+KG EKAR
Sbjct: 157 KHFGPAPGVPHSNTKPYVRSKGRKFEKAR 185
Score = 63.3 bits (147), Expect = 1e-10
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Frame = +2
Query: 8 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLASH 187
++K +RT +S+D+ T + FN ++L+RLFMS+ NRPP+S+ RL
Sbjct: 11 NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70
Query: 188 M--KKPTREGL----IAVVVGTVTND 247
M K P R + IAV+VGTVT+D
Sbjct: 71 MEGKVPDRHAISGDQIAVIVGTVTDD 96
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 126 bits (303), Expect = 2e-29
Identities = 62/85 (72%), Positives = 69/85 (81%), Gaps = 2/85 (2%)
Frame = +1
Query: 259 KIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 438
+IPKM V AL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +NAREAVRHFG
Sbjct: 94 EIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPKNAREAVRHFG 153
Query: 439 PAPGAPRSHTKPYVRTKGH--EKAR 507
APG P SHTKPYVR+KG EKAR
Sbjct: 154 KAPGVPHSHTKPYVRSKGRKFEKAR 178
Score = 66.1 bits (154), Expect = 2e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Frame = +2
Query: 8 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLASH 187
++K +RT +S D+ T + FN ++L+RLFMS+ NRPP+S+ RLA
Sbjct: 11 NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70
Query: 188 MKKPTREGLIAVVVGTVTND 247
M + E IAV+VGTVT+D
Sbjct: 71 M-EGKEENNIAVIVGTVTDD 89
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 108 bits (260), Expect = 3e-24
Identities = 60/106 (56%), Positives = 71/106 (66%), Gaps = 19/106 (17%)
Frame = +1
Query: 247 RETYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT------------- 387
+ Y++P M VAAL TE ARARI+ GGE LTFDQLALRAP G+ T
Sbjct: 89 KRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYIAMPEILTIDNF 148
Query: 388 ----VLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKAR 507
VL++G +NAREAV+HFGPAPG P S+TKPYVR+KG EKAR
Sbjct: 149 ALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKAR 194
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/80 (42%), Positives = 48/80 (60%)
Frame = +2
Query: 8 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLASH 187
++K +RT KS D+ T + FN ++LRRLFMS+ NRPP+S+ RL
Sbjct: 11 NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70
Query: 188 MKKPTREGLIAVVVGTVTND 247
M+ +E IAV+VGTVT+D
Sbjct: 71 ME--GKENQIAVIVGTVTDD 88
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 213 KPSRVGFFMWLAKRDTEIG 157
+PS+V FFMWLA+R+ G
Sbjct: 899 EPSKVKFFMWLAEREVSHG 917
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -3
Query: 498 FMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQ 319
F+ +G GF++ + +V + S+ + LY + A SQLI + + +S
Sbjct: 455 FLLMGIGDGFALVGLQEYFYDQVPDSMRSLGIGLYLSVIGAGSFLSSQLITAVDRVTSHG 514
Query: 318 NACTSFFG-NMKSSHRHLRY 262
A +FG ++ SS L Y
Sbjct: 515 GAAAGWFGKDLNSSRLDLFY 534
>11_01_0572 +
4565353-4565535,4566856-4567095,4567922-4568086,
4568612-4568887
Length = 287
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 341 LLLISWLFVLRLARRQYWYKVSEML 415
LL+++WLFV+ RR W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 231 PTTTAIKPSRVGFFMWL-AKRDTEIGGRLIRLIKSR 127
P TTA KP RV F + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,423,671
Number of Sequences: 37544
Number of extensions: 366512
Number of successful extensions: 1116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -