Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30036
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)               99   3e-21
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)                      29   2.1  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_40204| Best HMM Match : KOW (HMM E-Value=0.00011)                   28   4.8  
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)                    27   8.3  
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   8.3  
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   8.3  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 50/92 (54%), Positives = 61/92 (66%), Gaps = 5/92 (5%)
 Frame = +1

Query: 247 RETYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAV 426
           +  +++P + + AL  +E ARARIL AGGEILTFDQLALRAP G+ TVL+QG R AREA 
Sbjct: 197 KRIFEVPALKICALRFSETARARILKAGGEILTFDQLALRAPLGQNTVLLQGPRKAREAE 256

Query: 427 RHFGPAPGAPRSHTK-----PYVRTKGHEKAR 507
           RH G APG P S T       Y+ T G  + R
Sbjct: 257 RHMGLAPGVPHSDTNWCGDLDYIGTDGDAQCR 288



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 36/82 (43%), Positives = 48/82 (58%)
 Frame = +2

Query: 2   KHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLA 181
           KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+S++RL 
Sbjct: 115 KHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLSLARLV 174

Query: 182 SHMKKPTREGLIAVVVGTVTND 247
             MK    +  I VVVG++T+D
Sbjct: 175 RKMKASGHKDKICVVVGSITDD 196


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 372 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 262
           R+ +S L+ S+N   ++QNA T+FF + K  H +  Y
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
          Length = 1248

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 415  REAVRHFGPAPGAPRSHTKPYVRTKGHEKARPVVV 519
            ++AV+   PAP APR    P V+  G ++  PV++
Sbjct: 978  KDAVKPSRPAPPAPRRPPPPAVKQDGEKEVLPVLL 1012


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 331 GEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRS 462
           GE+++ D++  +A   +       Q N  EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657


>SB_40204| Best HMM Match : KOW (HMM E-Value=0.00011)
          Length = 1198

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -3

Query: 555 GCVVLILKIRH*HDDWPCFFMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQY 388
           GC   ++++   H+D+PC  + +   + F     C  +R K    L  +    +QY
Sbjct: 67  GCFKALVEVFTRHNDYPCDMIPILNVVLFKTADACIDTREKAAQLLQILERRFFQY 122


>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1626

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/90 (22%), Positives = 34/90 (37%)
 Frame = +1

Query: 247 RETYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAV 426
           + T  +   + +A  +   A +   ++G   +   QL       KKT+ +     A  + 
Sbjct: 238 KRTKSLSSASSSAASLATTAFSTCSSSGSTFIAAHQLKSGNSGTKKTINMLNPGKAPNSA 297

Query: 427 RHFGPAPGAPRSHTKPYVRTKGHEKARPVV 516
                A   PR+  KP    K   KA P+V
Sbjct: 298 LSRPKAASKPRARAKPKAAPKAKSKAAPLV 327


>SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 365 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPR 490
           V+R   R+ W K  +++V  CV LA++     L +  +F  R
Sbjct: 34  VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRR 75


>SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 365 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPR 490
           V+R   R+ W K  +++V  CV LA++     L +  +F  R
Sbjct: 34  VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRR 75


>SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)
          Length = 1191

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +1

Query: 370 PTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEKARPVVVLMSNF*YKDY 549
           P  KKT++V GQ+N R A+  +   PG        Y R K H     +  L SN+ Y+D+
Sbjct: 571 PMYKKTIIVIGQKN-RTAIDEWNKYPG----QQSCYQRLKAH-VIYYLEGLHSNYKYRDH 624


>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 319 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 438
           LA  G   T        PT  +T+ + GQ   R A+R FG
Sbjct: 856 LATSGNTSTTISDNTATPTSSRTMQIPGQTQGRVALREFG 895


>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 785

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 229 HYHGNQTLTSWLLHVARQTRHRDWW 155
           HYH N+ L  +L  ++R      WW
Sbjct: 342 HYHSNEVLKDYLEMLSRTGPRHGWW 366


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 450  SWSRAKVTHCLTSISLTLYQY 388
            +W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,574,397
Number of Sequences: 59808
Number of extensions: 398333
Number of successful extensions: 1069
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)