Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30036
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    28   0.076
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           28   0.076
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           28   0.076
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     27   0.10 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.54 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.54 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   3.8  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   8.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   8.7  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 27.9 bits (59), Expect = 0.076
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 409 NAREAVRHFGPAPGAPRSHTKPYVRTKGHEKARPVVVLMSNF*YKDYTP 555
           N+ E  +  G   G P  + K  +R   +  AR +V  ++NF    Y P
Sbjct: 247 NSLEKAKQVGAFMGCPTRNVKEMIRCLRYRPARAIVETLANFMRFYYNP 295


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 27.9 bits (59), Expect = 0.076
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 409 NAREAVRHFGPAPGAPRSHTKPYVRTKGHEKARPVVVLMSNF*YKDYTP 555
           N+ E  +  G   G P  + K  +R   +  AR +V  ++NF    Y P
Sbjct: 118 NSLEKAKQVGAFMGCPTRNVKEMIRCLRYRPARAIVETLANFMRFYYNP 166


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 27.9 bits (59), Expect = 0.076
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 409 NAREAVRHFGPAPGAPRSHTKPYVRTKGHEKARPVVVLMSNF*YKDYTP 555
           N+ E  +  G   G P  + K  +R   +  AR +V  ++NF    Y P
Sbjct: 247 NSLEKAKQVGAFMGCPTRNVKEMIRCLRYRPARAIVETLANFMRFYYNP 295


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 40  SRYLLEVTCKALQILGQTYKCQIQSDRSTPALYEPYQPA 156
           S Y +  T    Q   QT + Q+  DR++P  Y  Y PA
Sbjct: 394 SLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPA 432


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 351 SAGSSCSDWQEDSTGTRSAKCS 416
           SAG+SC    E    TRSA C+
Sbjct: 26  SAGTSCKWLSEGGNDTRSADCT 47


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 270  DDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTGTRSAKCS 416
            +DGGCSS    S+  +   +++N Y     SS S +      +  + C+
Sbjct: 924  NDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFLYKSSESSCN 972


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 180 AKRDTEIGGRLIRLIKSRRRTI 115
           AK+ T IGG+ + ++KS  +++
Sbjct: 889 AKKATNIGGKPVAVVKSSAQSL 910


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 348 KSKNFSSSSQNACTSFFGNMKSSHRHLRYLVRLTSFVTV 232
           +S   S+  +N   +   N  +SH+HLR  +R T  V V
Sbjct: 103 RSSTSSNDPKNQYKNQNNNHYTSHQHLRTHLRGTLTVNV 141


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 408 SLTLYQYCLLASRS 367
           S+T Y YCLL + S
Sbjct: 69  SITCYMYCLLEAFS 82


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 408 SLTLYQYCLLASRS 367
           S+T Y YCLL + S
Sbjct: 69  SITCYMYCLLEAFS 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,805
Number of Sequences: 438
Number of extensions: 3499
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)