Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30035X
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 31 0.086
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 31 0.15
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 27 2.5
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 27 2.5
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 26 3.2
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 5.7
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 25 5.7
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 25 5.7
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 25 7.5
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 25 9.9
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 31.5 bits (68), Expect = 0.086
Identities = 14/63 (22%), Positives = 34/63 (53%)
Frame = -3
Query: 532 YNRRV*IIESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN*R 353
Y ++ I +++++E+ + L+ + + + Q+K LL+ N ++++ + D N
Sbjct: 306 YEEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREM 365
Query: 352 NAN 344
NAN
Sbjct: 366 NAN 368
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = -3
Query: 490 LNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN 359
L S + E + +H L+ L Q+N +++ E+ E+N ++++ N
Sbjct: 520 LKSQIRDQELTIEKLHDSLETLSQTNNSLQCEISEKNAELNSVN 563
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 30.7 bits (66), Expect = 0.15
Identities = 12/37 (32%), Positives = 27/37 (72%)
Frame = -3
Query: 496 DELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMRE 386
D S+L+ L+R+N+++ +QLK + NI++++++ E
Sbjct: 646 DSTISSLESLKRENEELREQLKVEHEENISMQKQLSE 682
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 466 ERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN 359
+R+N Q +++L +SN+ + + E K SNSN
Sbjct: 550 KRRNSGTEQVVRQLSKSNVEVIGKGGERKKVASNSN 585
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = -3
Query: 514 IIESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNS 362
I+ + +DELNS LE + + + L + ++++E + +SN+
Sbjct: 31 ILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNN 81
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 469 LERKNDDIHQQLKELLQSNIAIRQEMRE 386
LER+ DD+ Q+L+E+ ++ E+ E
Sbjct: 126 LERERDDMEQKLEEMTDKYTKVKAELDE 153
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 502 TLDELNSALDFLERKNDDIHQQLKE 428
T ELNSALD +++ +IH +LKE
Sbjct: 1349 TRKELNSALDSCKKREAEIH-RLKE 1372
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = -1
Query: 465 SVKMMIFTNN*KSFCNPILQLDKKCVKKIRTSATVIEEMQIQHYFKFNCA 316
S+ +M+ + FC+ + K V K+R + ++ ++ +H+ F+ A
Sbjct: 103 SIGLMLLLSALIGFCSESIVTSVKSVYKLRKAHSIFSKINKRHFDHFSAA 152
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -3
Query: 490 LNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSN 365
+++ L+ LE DD + +LKE NIA +QE+ ++S+
Sbjct: 433 VDAYLNPLEFNFDDKNVKLKEFGSPNIAYKQELNSFQGELSS 474
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Frame = -1
Query: 453 MIFTNN*KSFCNPILQLDKK-CV--KKIRTSATVIEEM 349
++ ++N K+F NP++ L +K CV +K+ TV ++M
Sbjct: 202 LLHSSNLKAFINPLIPLTQKFCVQLQKLFADLTVSDQM 239
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 247 YHLSIFSDQYHKVSVSF--K*CIIIHLQYLSMNNYLACLHHLNVISCIFMSVG 95
Y++S Y+ + + F + +++HL+ +++ HH+ + I +S G
Sbjct: 195 YYMSPLFKAYYLIQLGFWLQQILVLHLEQRRADHWQMFAHHIVTCALIILSYG 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,705
Number of Sequences: 5004
Number of extensions: 37801
Number of successful extensions: 102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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