Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30034
(699 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellu... 146 6e-34
UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishma... 121 1e-26
UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|R... 109 6e-23
UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1; Ostreoc... 88 2e-16
UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15; Archa... 77 6e-13
UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2; Thermo... 74 3e-12
UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiell... 73 7e-12
UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultu... 73 9e-12
UniRef50_P83731 Cluster: 60S ribosomal protein L24; n=72; Fungi/... 55 2e-06
UniRef50_Q8JGR4 Cluster: 60S ribosomal protein L24; n=6; Metazoa... 55 2e-06
UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole ge... 54 3e-06
UniRef50_A7T293 Cluster: Predicted protein; n=7; Nematostella ve... 53 6e-06
UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1; ... 51 2e-05
UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3; ... 50 5e-05
UniRef50_Q8SY98 Cluster: RH14088p; n=1; Drosophila melanogaster|... 48 2e-04
UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15; Bacter... 48 2e-04
UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48; Bacter... 47 4e-04
UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular or... 46 7e-04
UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3; ... 46 9e-04
UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellul... 45 0.002
UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n... 45 0.002
UniRef50_Q0ULI2 Cluster: Predicted protein; n=12; Pezizomycotina... 44 0.004
UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellu... 44 0.005
UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellu... 44 0.005
UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis... 43 0.006
UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33; Bacter... 42 0.015
UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus ... 42 0.019
UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellu... 40 0.044
UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putati... 38 0.18
UniRef50_P24000 Cluster: 60S ribosomal protein L24-B; n=22; Fung... 38 0.18
UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1; Neorick... 37 0.41
UniRef50_O01868 Cluster: 60S ribosomal protein L24; n=4; Bilater... 37 0.41
UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11; ... 37 0.55
UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whol... 36 0.72
UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29; ... 36 0.72
UniRef50_P54064 Cluster: 50S ribosomal protein L24e; n=10; Eurya... 36 0.96
UniRef50_UPI000049842E Cluster: 60S ribosomal protein L24; n=2; ... 36 1.3
UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639... 36 1.3
UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;... 36 1.3
UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11; n=... 34 2.9
UniRef50_Q10353 Cluster: Ribosome biogenesis protein rlp24; n=2;... 34 2.9
UniRef50_Q9C6S3 Cluster: 30S ribosomal protein S11, putative; n=... 34 3.9
UniRef50_UPI0001552E13 Cluster: PREDICTED: hypothetical protein;... 33 5.1
UniRef50_Q7VCT6 Cluster: Predicted protein; n=1; Prochlorococcus... 33 6.7
UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps... 33 6.7
UniRef50_Q01BM3 Cluster: Chromosome 04 contig 1, DNA sequence; n... 33 6.7
UniRef50_A2ZTR3 Cluster: Putative uncharacterized protein; n=3; ... 33 8.9
UniRef50_Q7R0M0 Cluster: GLP_154_26137_25568; n=1; Giardia lambl... 33 8.9
>UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellular
organisms|Rep: 40S ribosomal protein S14 - Homo sapiens
(Human)
Length = 151
Score = 146 bits (353), Expect = 6e-34
Identities = 69/88 (78%), Positives = 75/88 (85%)
Frame = -1
Query: 519 PEKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 340
P K K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGMKV
Sbjct: 3 PRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKV 62
Query: 339 KADRDEASPYAAMLAAQDVAEKCKTLGI 256
KADRDE+SPYAAMLAAQDVA++CK LGI
Sbjct: 63 KADRDESSPYAAMLAAQDVAQRCKELGI 90
Score = 48.4 bits (110), Expect = 2e-04
Identities = 27/49 (55%), Positives = 28/49 (57%)
Frame = -3
Query: 253 ALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 107
ALHIKLRA GAQ MKIGRIEDVTP+PSDST
Sbjct: 92 ALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
>UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishmania
major|Rep: 40S ribosomal protein S14 - Leishmania major
Length = 203
Score = 121 bits (292), Expect = 1e-26
Identities = 55/87 (63%), Positives = 68/87 (78%)
Frame = -1
Query: 516 EKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 337
+ +++K++ GP G+ V+GV HIFASFNDTFVHVTD+SGRET +VTGGMKVK
Sbjct: 6 QATRMSKKQEVKAYGPNVKKGDLVYGVVHIFASFNDTFVHVTDMSGRETYVKVTGGMKVK 65
Query: 336 ADRDEASPYAAMLAAQDVAEKCKTLGI 256
ADRDE+SPYAAM+AAQDV +CK GI
Sbjct: 66 ADRDESSPYAAMMAAQDVVARCKECGI 92
Score = 34.7 bits (76), Expect = 2.2
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 155 EDWPH*RCHPRTIRLDP*EGWP 90
EDWPH CHP RL P +G+P
Sbjct: 127 EDWPHRGCHPDPDRLHPPQGFP 148
>UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|Rep:
Ribosomal protein S14 - Palaemonetes pugio
Length = 77
Score = 109 bits (262), Expect = 6e-23
Identities = 52/68 (76%), Positives = 55/68 (80%)
Frame = -1
Query: 519 PEKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 340
P K K KEEVQV LGPQ GE VF V HI+AS+NDTFVHVTDLSGRETI RVTGG KV
Sbjct: 3 PRKGKTPKEEVQVQLGPQVREGENVFAVCHIYASYNDTFVHVTDLSGRETIIRVTGGQKV 62
Query: 339 KADRDEAS 316
KADRDE+S
Sbjct: 63 KADRDESS 70
>UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1;
Ostreococcus tauri|Rep: 40S ribosomal protein S14 -
Ostreococcus tauri
Length = 243
Score = 88.2 bits (209), Expect = 2e-16
Identities = 40/48 (83%), Positives = 45/48 (93%)
Frame = -1
Query: 399 HVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGI 256
HVTDLSG+ET++R TGGMKVKADRDE+SPYAAMLAAQDVA +CK LGI
Sbjct: 90 HVTDLSGKETLSRCTGGMKVKADRDESSPYAAMLAAQDVAARCKELGI 137
Score = 47.2 bits (107), Expect = 4e-04
Identities = 24/36 (66%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = -1
Query: 504 VAKEEVQVT-LGPQHLVGETVFGVAHIFASFNDTFV 400
V+ V T +GPQ GE VFGVAHIFASFNDTFV
Sbjct: 9 VSVRRVMATYVGPQAREGELVFGVAHIFASFNDTFV 44
Score = 41.9 bits (94), Expect = 0.015
Identities = 23/49 (46%), Positives = 26/49 (53%)
Frame = -3
Query: 253 ALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 107
ALHIK+RA G Q +KIGRIEDVTP P+DST
Sbjct: 139 ALHIKMRAKGGNKTKSPGPGGQSALRALSRSGIKIGRIEDVTPTPTDST 187
>UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15;
Archaea|Rep: 30S ribosomal protein S11P - Methanococcus
jannaschii
Length = 129
Score = 76.6 bits (180), Expect = 6e-13
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = -1
Query: 444 FGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 265
+G+ HI++S+N+T +H TD++G ETIARV+GG + RDE SPYAAM AA +AE K
Sbjct: 9 WGIVHIYSSYNNTIIHATDITGAETIARVSGGRVTRNQRDEGSPYAAMQAAFKLAEVLKE 68
Query: 264 LGI 256
GI
Sbjct: 69 RGI 71
Score = 39.1 bits (87), Expect = 0.10
Identities = 21/48 (43%), Positives = 25/48 (52%)
Frame = -3
Query: 250 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 107
+HIK+RA GAQ ++IGRIEDVTPVP D T
Sbjct: 74 IHIKVRAPGGSGQKNPGPGAQAAIRALARAGLRIGRIEDVTPVPHDGT 121
>UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S11P -
Cenarchaeum symbiosum
Length = 198
Score = 74.1 bits (174), Expect = 3e-12
Identities = 32/71 (45%), Positives = 49/71 (69%)
Frame = -1
Query: 471 PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 292
P+ + G+AHI++S+N+T +H+TDL+G ET++ +GG+ V ADR E+SP+AAM AA
Sbjct: 66 PETTPADEKLGIAHIYSSYNNTIIHMTDLTGAETVSISSGGVHVNADRYESSPFAAMKAA 125
Query: 291 QDVAEKCKTLG 259
V E + G
Sbjct: 126 NKVIESARAKG 136
Score = 35.1 bits (77), Expect = 1.7
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -3
Query: 247 HIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 107
HI++RA GAQ +IGRI+DVTP+P D+T
Sbjct: 141 HIRVRAVGGVGSRVPGPGAQAAIRALARGGFRIGRIDDVTPIPHDTT 187
>UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiella
natans|Rep: Ribosomal protein S14 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 145
Score = 72.9 bits (171), Expect = 7e-12
Identities = 31/64 (48%), Positives = 45/64 (70%)
Frame = -1
Query: 447 VFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 268
+FG+ HI ++ NDT +HVTD++G ETI+R++ G+ +D+ S Y AMLA Q V+ CK
Sbjct: 11 LFGILHILSTKNDTIIHVTDITGSETISRISSGIVATNGKDKKSNYCAMLATQKVSNVCK 70
Query: 267 TLGI 256
LGI
Sbjct: 71 VLGI 74
Score = 35.9 bits (79), Expect = 0.96
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = -3
Query: 253 ALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 107
ALHIK+RA GA KIGRIED TP P++ T
Sbjct: 76 ALHIKIRARGGNASHLISTGAHTVVTTLVRLGFKIGRIEDTTPTPTNGT 124
>UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultured
euryarchaeote ARMAN-2|Rep: 30S ribosomal protein S11 -
uncultured euryarchaeote ARMAN-2
Length = 169
Score = 72.5 bits (170), Expect = 9e-12
Identities = 36/63 (57%), Positives = 44/63 (69%)
Frame = -1
Query: 444 FGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 265
+ VAH+++S NDT + +TDLSG ETIA +GGM V AD E SPYAAM AA VA + K
Sbjct: 46 WAVAHVYSSKNDTIITLTDLSGSETIAVGSGGMMVNADSQEGSPYAAMQAAYKVAAEAKE 105
Query: 264 LGI 256
GI
Sbjct: 106 KGI 108
Score = 33.1 bits (72), Expect = 6.7
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 250 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 107
++I++RA GAQ +++ RIEDVTP+P+D+T
Sbjct: 111 INIEIRAPGGHGSKTPGHGAQAVVRVLARSGLRVNRIEDVTPIPTDTT 158
>UniRef50_P83731 Cluster: 60S ribosomal protein L24; n=72;
Fungi/Metazoa group|Rep: 60S ribosomal protein L24 -
Homo sapiens (Human)
Length = 157
Score = 54.8 bits (126), Expect = 2e-06
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
KCE+A L +RNPR++ WTVLYRRK KKGQ E
Sbjct: 35 KCESAFLSKRNPRQINWTVLYRRKHKKGQSE 65
>UniRef50_Q8JGR4 Cluster: 60S ribosomal protein L24; n=6;
Metazoa|Rep: 60S ribosomal protein L24 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 157
Score = 54.8 bits (126), Expect = 2e-06
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
KCE+A L +RNPR++ WTVLYRRK KKGQ E
Sbjct: 35 KCESAFLSKRNPRQINWTVLYRRKHKKGQSE 65
>UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_246, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 182
Score = 54.4 bits (125), Expect = 3e-06
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = -1
Query: 375 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGI 256
ET+ R TGGMK K D +E+SP AAM AAQDV+++CK L I
Sbjct: 50 ETLVRTTGGMKEKTDGEESSPCAAMPAAQDVSQECKELDI 89
>UniRef50_A7T293 Cluster: Predicted protein; n=7; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 143
Score = 53.2 bits (122), Expect = 6e-06
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
+CE A LMRRNPR+VTWTVLYR K KKG +E
Sbjct: 15 RCERALLMRRNPREVTWTVLYRCKHKKGTQE 45
>UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 104
Score = 51.2 bits (117), Expect = 2e-05
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = -1
Query: 375 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGI 256
ET+ R TGGMK KAD +E+SP AAM AAQDV+++ K L I
Sbjct: 29 ETLVRSTGGMKEKADGEESSPCAAMPAAQDVSQRFKELDI 68
>UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 332
Score = 50.0 bits (114), Expect = 5e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -1
Query: 360 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 268
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
>UniRef50_Q8SY98 Cluster: RH14088p; n=1; Drosophila
melanogaster|Rep: RH14088p - Drosophila melanogaster
(Fruit fly)
Length = 123
Score = 48.0 bits (109), Expect = 2e-04
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 572 MRRNPRKVTWTVLYRRKFKKGQEE 643
M+RNPRKVTWTVLYRRK +KG EE
Sbjct: 1 MKRNPRKVTWTVLYRRKHRKGIEE 24
>UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15;
Bacteria|Rep: 30S ribosomal protein S11 - Silicibacter
pomeroyi
Length = 130
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = -1
Query: 441 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 262
GVAH+ ++FN+T + ++D+ G G M K R +++PYAA LAA+D K +
Sbjct: 20 GVAHVNSTFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQLAAEDAGRKAQDH 78
Query: 261 GIR 253
G++
Sbjct: 79 GVK 81
>UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48;
Bacteria|Rep: 30S ribosomal protein S11 - Streptococcus
mutans
Length = 127
Score = 47.2 bits (107), Expect = 4e-04
Identities = 22/63 (34%), Positives = 38/63 (60%)
Frame = -1
Query: 441 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 262
G+AHI A+FN+T V +TD+ G G + K R +++P+AA +AA+ A+ +
Sbjct: 17 GIAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEH 75
Query: 261 GIR 253
G++
Sbjct: 76 GLK 78
>UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular
organisms|Rep: Ribosomal protein S11 - Chlorokybus
atmophyticus (Soil alga)
Length = 262
Score = 46.4 bits (105), Expect = 7e-04
Identities = 26/66 (39%), Positives = 36/66 (54%)
Frame = -1
Query: 441 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 262
GVAHI + N+T + +TDL G +G + K R + S YAA AA+ A+K L
Sbjct: 152 GVAHIQTTLNNTIITITDLDGNTKSWSSSGSIGFKGSRRKTS-YAAQAAAETAAKKSIQL 210
Query: 261 GIRPCT 244
GI+ T
Sbjct: 211 GIKDVT 216
>UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3;
Homo/Pan/Gorilla group|Rep: Similar to ribosomal protein
S14 - Homo sapiens (Human)
Length = 350
Score = 46.0 bits (104), Expect = 9e-04
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = -1
Query: 348 MKVKADRDEASPYAAMLAAQDVAEKCKTLGI 256
MK +AD+DE+SP AML AQDV ++CK LGI
Sbjct: 1 MKEQADQDESSPCTAMLTAQDVVQRCKELGI 31
>UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellular
organisms|Rep: 30S ribosomal protein S11 - Shewanella
oneidensis
Length = 130
Score = 45.2 bits (102), Expect = 0.002
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = -1
Query: 441 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 262
G+AHI ASFN+T V +TD G +GG + R +++P+AA +AA+ +
Sbjct: 20 GMAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGAAAQDY 78
Query: 261 GIR 253
G++
Sbjct: 79 GLK 81
>UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DBF82A UniRef100 entry -
Rattus norvegicus
Length = 119
Score = 44.8 bits (101), Expect = 0.002
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = -1
Query: 483 VTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGR-ETIARVTGGMKVK 337
++L PQ + G+ V GV +IFASF D+F++ TD+ G+ T VT MK +
Sbjct: 5 LSLRPQVVEGQNVLGVCYIFASFGDSFIYGTDVYGKVNTCQYVTSRMKTQ 54
>UniRef50_Q0ULI2 Cluster: Predicted protein; n=12;
Pezizomycotina|Rep: Predicted protein - Phaeosphaeria
nodorum (Septoria nodorum)
Length = 161
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
K E+ L R+NPRK++WT LYRR KKG E
Sbjct: 35 KTESLFLQRKNPRKISWTTLYRRMHKKGISE 65
>UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellular
organisms|Rep: 30S ribosomal protein S11 - Polaromonas
sp. (strain JS666 / ATCC BAA-500)
Length = 134
Score = 43.6 bits (98), Expect = 0.005
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = -1
Query: 441 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 262
G+AH+ ASFN+T + +TD G +GG K R +++P+AA +A++
Sbjct: 24 GIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGSR-KSTPFAAQVASEVAGRAAIEQ 82
Query: 261 GIR 253
GI+
Sbjct: 83 GIK 85
>UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellular
organisms|Rep: 30S ribosomal protein S11 - Acidobacteria
bacterium (strain Ellin345)
Length = 142
Score = 43.6 bits (98), Expect = 0.005
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = -1
Query: 441 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 262
G+AHI ASFN+T V ++D SG + +G + + R + +P+AA AA A +
Sbjct: 32 GLAHIQASFNNTIVTISDPSGNVVSWKSSGSLGFRGSR-KGTPFAAQQAAMTAANMARDH 90
Query: 261 GIR 253
G+R
Sbjct: 91 GMR 93
>UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S11 -
Victivallis vadensis ATCC BAA-548
Length = 148
Score = 43.2 bits (97), Expect = 0.006
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = -1
Query: 441 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 262
G+A++ A+FN+T V TDL G I TGG +++ YAA + A D A+K + +
Sbjct: 38 GIAYVLATFNNTKVTFTDLHG-NVICWSTGGKNGFKGSRKSTAYAAQVIAGDAAKKAQLV 96
Query: 261 GIR 253
G++
Sbjct: 97 GMK 99
>UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33;
Bacteria|Rep: 30S ribosomal protein S11 - Mycoplasma
pulmonis
Length = 136
Score = 41.9 bits (94), Expect = 0.015
Identities = 25/63 (39%), Positives = 36/63 (57%)
Frame = -1
Query: 441 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 262
GVAHI ++ N+T V +D G +G + K + + + YAA LAAQ+ +EK K
Sbjct: 21 GVAHIHSTHNNTIVTFSDEKGNVISWASSGTIGYKGTKKKTA-YAAGLAAQNASEKAKEH 79
Query: 261 GIR 253
GIR
Sbjct: 80 GIR 82
>UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus
oeni ATCC BAA-1163|Rep: Ribosomal protein S11 -
Oenococcus oeni ATCC BAA-1163
Length = 113
Score = 41.5 bits (93), Expect = 0.019
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = -1
Query: 441 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAE 277
GVAHI ++FN+T V +TD +G G + K R +++P+AA LA + A+
Sbjct: 22 GVAHIHSTFNNTIVLITDEAGNAVSWSSAGSLGFKGSR-KSTPFAAQLAGEAAAK 75
>UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellular
organisms|Rep: 30S ribosomal protein S11 - Bacillus
subtilis
Length = 131
Score = 40.3 bits (90), Expect = 0.044
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = -1
Query: 441 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAE 277
G+AHI ++FN+T V +TD G G + + R +++P+AA +AA+ A+
Sbjct: 21 GIAHIRSTFNNTIVTITDTHGNAISWSSAGALGFRGSR-KSTPFAAQMAAETAAK 74
>UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putative;
n=19; Spermatophyta|Rep: Small subunit ribosomal
protein, putative - Oryza sativa subsp. japonica (Rice)
Length = 366
Score = 38.3 bits (85), Expect = 0.18
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -1
Query: 432 HIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIR 253
H+ N TFV VTD+ G + G ++ + R S YAA A+ V + +G++
Sbjct: 248 HVLLKRNKTFVTVTDVRGNKKTGASAGCLEDRKGRSRLSKYAAEATAEHVGRAARKMGLK 307
>UniRef50_P24000 Cluster: 60S ribosomal protein L24-B; n=22;
Fungi/Metazoa group|Rep: 60S ribosomal protein L24-B -
Saccharomyces cerevisiae (Baker's yeast)
Length = 155
Score = 38.3 bits (85), Expect = 0.18
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 503 TLFFSGPWLSL*LES*KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
TLF G ++ K + R+NPR++ WTVL+R+ KKG E
Sbjct: 19 TLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITE 65
>UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S11 - Neorickettsia sennetsu (strain Miyayama)
Length = 120
Score = 37.1 bits (82), Expect = 0.41
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = -1
Query: 447 VFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 268
V G AH+ +FN+ ++ VTD G +G + K ++ +++ YAA A + K K
Sbjct: 8 VSGNAHVIVTFNNVYISVTDHQGNVQGWASSGSVGFKGNK-KSTAYAAQSVATTLMTKLK 66
Query: 267 TLGIR 253
+G++
Sbjct: 67 RIGLK 71
>UniRef50_O01868 Cluster: 60S ribosomal protein L24; n=4;
Bilateria|Rep: 60S ribosomal protein L24 -
Caenorhabditis elegans
Length = 159
Score = 37.1 bits (82), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2
Query: 572 MRRNPRKVTWTVLYRRKFKKG 634
+RRNPR + WTVLYR K KKG
Sbjct: 42 LRRNPRDIRWTVLYRIKNKKG 62
>UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11;
n=85; Tracheophyta|Rep: Chloroplast 30S ribosomal
protein S11 - Arabidopsis thaliana (Mouse-ear cress)
Length = 138
Score = 36.7 bits (81), Expect = 0.55
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = -1
Query: 441 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 292
GV H+ ASFN+T V VTD+ GR G + R +P+AA AA
Sbjct: 28 GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTR-RGTPFAAQTAA 76
>UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whole
genome shotgun sequence; n=3; cellular organisms|Rep:
Chromosome undetermined SCAF14706, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 215
Score = 36.3 bits (80), Expect = 0.72
Identities = 18/61 (29%), Positives = 35/61 (57%)
Frame = -1
Query: 438 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 259
+AH+ A++N+T + VTD +G+ ++ R + G + + +++P AA A A K G
Sbjct: 106 IAHVKATYNNTHIQVTDSAGK-SMVRTSCGTEGFKNIKKSTPIAAQTAGISAAAKATAKG 164
Query: 258 I 256
+
Sbjct: 165 V 165
>UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29;
Magnoliophyta|Rep: Small subunit ribosomal protein -
Berberis thunbergii (Japanese barberry)
Length = 150
Score = 36.3 bits (80), Expect = 0.72
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -1
Query: 438 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 259
+ H+ N+TFV VTD G + G ++ S YAA A+ V + LG
Sbjct: 46 LVHLLPLHNNTFVTVTDARGNKKTGASAGSLEEFKGGSRLSRYAAKATAEHVGRSARNLG 105
Query: 258 IR 253
++
Sbjct: 106 MK 107
>UniRef50_P54064 Cluster: 50S ribosomal protein L24e; n=10;
Euryarchaeota|Rep: 50S ribosomal protein L24e -
Methanococcus jannaschii
Length = 70
Score = 35.9 bits (79), Expect = 0.96
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLY---RRKFKKGQE 640
KCE ++ M RNPRK+ WT +Y + + KK QE
Sbjct: 36 KCEKSYRMGRNPRKLKWTKVYQDMKAELKKAQE 68
>UniRef50_UPI000049842E Cluster: 60S ribosomal protein L24; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L24 - Entamoeba histolytica HM-1:IMSS
Length = 163
Score = 35.5 bits (78), Expect = 1.3
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 569 LMRRNPRKVTWTVLYRRKFKKGQE 640
L + NPRKV WT +YR+ KKGQ+
Sbjct: 43 LRKTNPRKVFWTAIYRQLNKKGQQ 66
>UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639;
n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
protein PH1639 - Pyrococcus horikoshii
Length = 102
Score = 35.5 bits (78), Expect = 1.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 274 FLCYILCR---QHSSVG*RFITVSLHLHATSDTGDSFPAG*ISNMNECVI 414
F C+ C +H +G R I VS + H T+ + F G ISN+N VI
Sbjct: 51 FQCFFCCSPSSKHCCIGGRLIPVSFNYHTTAPSAYRFRTGDISNVNNGVI 100
>UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;
Streptophyta|Rep: Plastid 30S ribosomal protein S11 -
Epifagus virginiana (Beechdrops)
Length = 136
Score = 35.5 bits (78), Expect = 1.3
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -1
Query: 441 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 292
GV H+ SFN+T V VTD+ GR G K R + +AA +AA
Sbjct: 28 GVIHVQTSFNNTIVAVTDIKGRVVSWSSAGTCGFKGTR-RGTSFAAQIAA 76
>UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S11 - Prototheca wickerhamii
Length = 128
Score = 34.3 bits (75), Expect = 2.9
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = -1
Query: 441 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 262
G+ HI ++ N+T + +TDL G G + K R +++ YA+ AA+ +A K
Sbjct: 18 GIVHIQSTTNNTLITLTDLEGNTQFFVSAGTLGFKNSR-KSTVYASGAAAEALASKAFNE 76
Query: 261 GIR 253
G R
Sbjct: 77 GYR 79
>UniRef50_Q10353 Cluster: Ribosome biogenesis protein rlp24; n=2;
cellular organisms|Rep: Ribosome biogenesis protein
rlp24 - Schizosaccharomyces pombe (Fission yeast)
Length = 192
Score = 34.3 bits (75), Expect = 2.9
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKK 631
KC M+RNPRKV WT YR+ K
Sbjct: 35 KCHKNFKMKRNPRKVAWTKAYRKAHGK 61
>UniRef50_Q9C6S3 Cluster: 30S ribosomal protein S11, putative; n=2;
Arabidopsis thaliana|Rep: 30S ribosomal protein S11,
putative - Arabidopsis thaliana (Mouse-ear cress)
Length = 235
Score = 33.9 bits (74), Expect = 3.9
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = -1
Query: 453 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 274
ET + HI N+TFV VTD G +G + + + Y A A+++ +
Sbjct: 111 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 170
Query: 273 CKTLGIR 253
K +G++
Sbjct: 171 AKAMGLK 177
>UniRef50_UPI0001552E13 Cluster: PREDICTED: hypothetical protein;
n=2; Fungi/Metazoa group|Rep: PREDICTED: hypothetical
protein - Mus musculus
Length = 196
Score = 33.5 bits (73), Expect = 5.1
Identities = 27/119 (22%), Positives = 52/119 (43%)
Frame = +2
Query: 149 NLHT*TSKSPKCRLSTRTRGLCFVSTSSTELYVQGLMPRVLHFSATSCAANIAA*GDASS 328
++ T T+ S S+ + +C ST+S+ S+++C+ + + SS
Sbjct: 24 SISTSTTSSTSTSTSSTSSSICSTSTTSST--------STSSTSSSTCSTSTTSSTSTSS 75
Query: 329 RSAFTFMPPVTRAIVSRPDKSVT*TNVSLNEAKMCATPNTVSPTKCWGPRVTWTSSLAT 505
S+ T T +I S S + T+ S + ++ +T +PT + TSS +T
Sbjct: 76 TSSSTCSTSTTSSITSSTSTSTSSTSTSSTSSTSTSSTSTSTPTPSTSTSTSTTSSTST 134
>UniRef50_Q7VCT6 Cluster: Predicted protein; n=1; Prochlorococcus
marinus|Rep: Predicted protein - Prochlorococcus marinus
Length = 58
Score = 33.1 bits (72), Expect = 6.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 185 CTSGSCSFKYEDWPH*RCHPRTIRLD 108
C++ SCSF Y+DW H R H + D
Sbjct: 4 CSNRSCSFPYDDWHHCRIHRSKVTND 29
>UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps11
- Ostreococcus tauri
Length = 121
Score = 33.1 bits (72), Expect = 6.7
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 429 IFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKC 271
I + N+TFV++TDL G +G + K + ++S YAA + V + C
Sbjct: 15 ISTTLNNTFVNLTDLEGNTLCCVSSGSLGFKGSK-KSSSYAAQSTTEKVLQFC 66
>UniRef50_Q01BM3 Cluster: Chromosome 04 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 04 contig 1, DNA
sequence - Ostreococcus tauri
Length = 484
Score = 33.1 bits (72), Expect = 6.7
Identities = 23/82 (28%), Positives = 44/82 (53%)
Frame = -1
Query: 456 GETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAE 277
G++++G+A + ++ VH +L R +I + ++V D D+AS YA + A+ A
Sbjct: 155 GDSIYGIARAHGTTSERLVHANELGVRRSI-EIGQVLRVPVDIDKAS-YA--VKAKFHAT 210
Query: 276 KCKTLGIRPCT*SSVLLVETKQ 211
+LG P + S+L +K+
Sbjct: 211 NAASLGTTPASSRSLLAPLSKR 232
>UniRef50_A2ZTR3 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 202
Score = 32.7 bits (71), Expect = 8.9
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYR 616
KC M+RNPRKV WT YR
Sbjct: 73 KCHKNFKMKRNPRKVKWTKAYR 94
>UniRef50_Q7R0M0 Cluster: GLP_154_26137_25568; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_154_26137_25568 - Giardia lamblia
ATCC 50803
Length = 189
Score = 32.7 bits (71), Expect = 8.9
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYR 616
KC M+RNPRKV WT YR
Sbjct: 36 KCHRNFKMKRNPRKVRWTKTYR 57
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,832,608
Number of Sequences: 1657284
Number of extensions: 13836722
Number of successful extensions: 31581
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 30204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31570
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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