Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30034
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc... 128 1e-30
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa... 128 1e-30
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 44 3e-05
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 44 3e-05
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 34 0.017
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 28 1.5
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 4.5
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 26 6.0
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 7.9
>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 128 bits (308), Expect = 1e-30
Identities = 59/74 (79%), Positives = 65/74 (87%)
Frame = -1
Query: 477 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 298
+GPQ GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5 VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64
Query: 297 AAQDVAEKCKTLGI 256
AAQD A KCK +GI
Sbjct: 65 AAQDAAAKCKEVGI 78
Score = 45.2 bits (102), Expect = 9e-06
Identities = 24/49 (48%), Positives = 28/49 (57%)
Frame = -3
Query: 253 ALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 107
ALHIK+RA GAQ M+IGRIEDVTP+P+DST
Sbjct: 80 ALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDST 128
>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 128 bits (308), Expect = 1e-30
Identities = 59/74 (79%), Positives = 65/74 (87%)
Frame = -1
Query: 477 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 298
+GPQ GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5 VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64
Query: 297 AAQDVAEKCKTLGI 256
AAQD A KCK +GI
Sbjct: 65 AAQDAAAKCKEVGI 78
Score = 45.2 bits (102), Expect = 9e-06
Identities = 24/49 (48%), Positives = 28/49 (57%)
Frame = -3
Query: 253 ALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 107
ALHIK+RA GAQ M+IGRIEDVTP+P+DST
Sbjct: 80 ALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDST 128
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
K E+ L R+NPR+++WTVLYRR KKG E
Sbjct: 35 KSESLFLQRKNPRRLSWTVLYRRMHKKGISE 65
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
K E+ L R+NPR+++WTVLYRR KKG E
Sbjct: 35 KSESLFLQRKNPRRLSWTVLYRRMHKKGISE 65
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 34.3 bits (75), Expect = 0.017
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKK 631
KC M+RNPRKV WT YR+ K
Sbjct: 35 KCHKNFKMKRNPRKVAWTKAYRKAHGK 61
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 375 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 274
ET+ V G +KV + + + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 446 CLV*HTFSLHSMTHSFMLLIYPAGKLSPVSLVA*R*RLTVMKRHPTLLCWR 294
CLV T S++ + + ++ VSLV +L ++KR P LL W+
Sbjct: 317 CLVYSTCSINPIENEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWK 367
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 467 WGPRVTWTSSLATLFF 514
+GPR+ WTSS ++L F
Sbjct: 304 FGPRIFWTSSQSSLMF 319
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -3
Query: 403 RSCY*FIRP--GNYRPCHWWHEGE 338
RSC+ +R N++ C WW EG+
Sbjct: 347 RSCHSALRSIFTNFKGCTWWIEGD 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,195
Number of Sequences: 5004
Number of extensions: 54321
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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