Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30034
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0) 131 6e-31
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 56 2e-08
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 56 2e-08
SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40) 56 2e-08
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 56 2e-08
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07) 56 2e-08
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 56 2e-08
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07) 54 1e-07
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07) 53 2e-07
SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8) 30 1.6
SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4) 29 2.7
SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4) 29 2.7
SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_56400| Best HMM Match : MTS (HMM E-Value=0.44) 29 4.8
SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_7970| Best HMM Match : RCC1 (HMM E-Value=0) 28 8.4
>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
Length = 543
Score = 131 bits (316), Expect = 6e-31
Identities = 64/75 (85%), Positives = 69/75 (92%), Gaps = 1/75 (1%)
Frame = -1
Query: 477 LGPQHL-VGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAM 301
LG +H+ GE VFGVAHIFASFNDTFVHVTDLSGRETI+RVTGGMKVKADRDEASPYAAM
Sbjct: 187 LGWRHVGEGELVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAM 246
Query: 300 LAAQDVAEKCKTLGI 256
LAAQDVA +CK +GI
Sbjct: 247 LAAQDVAARCKEIGI 261
>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 113
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/31 (77%), Positives = 27/31 (87%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
+CE A LMRRNPR+VTWTVLYRRK KKG +E
Sbjct: 15 RCERALLMRRNPREVTWTVLYRRKHKKGTQE 45
>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/31 (77%), Positives = 27/31 (87%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
+CE A LMRRNPR+VTWTVLYRRK KKG +E
Sbjct: 15 RCERALLMRRNPREVTWTVLYRRKHKKGTQE 45
>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
Length = 154
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/31 (77%), Positives = 27/31 (87%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
+CE A LMRRNPR+VTWTVLYRRK KKG +E
Sbjct: 35 RCERALLMRRNPREVTWTVLYRRKHKKGTQE 65
>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/31 (77%), Positives = 27/31 (87%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
+CE A LMRRNPR+VTWTVLYRRK KKG +E
Sbjct: 15 RCERALLMRRNPREVTWTVLYRRKHKKGTQE 45
>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
Length = 139
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/31 (77%), Positives = 27/31 (87%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
+CE A LMRRNPR+VTWTVLYRRK KKG +E
Sbjct: 50 RCERALLMRRNPREVTWTVLYRRKHKKGTQE 80
>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/31 (77%), Positives = 27/31 (87%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
+CE A LMRRNPR+VTWTVLYRRK KKG +E
Sbjct: 15 RCERALLMRRNPREVTWTVLYRRKHKKGTQE 45
>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
Length = 104
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
+CE A LMRRNPR+VTWTVLYRR KKG +E
Sbjct: 15 RCERALLMRRNPREVTWTVLYRRMHKKGTQE 45
>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
Length = 90
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
+CE A LMRRNPR+VTWTVLYR K KKG +E
Sbjct: 15 RCERALLMRRNPREVTWTVLYRCKHKKGTQE 45
>SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8)
Length = 178
Score = 30.3 bits (65), Expect = 1.6
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -1
Query: 510 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLS-GRETIARVTGGMKVKA 334
NK+ K +TLG + ET AH A + HVTD RE ++ + KV A
Sbjct: 65 NKLQKATDTMTLGANAINTETKPVGAHNMAGGHARVQHVTDPGIDREVRSKASAPAKVHA 124
Query: 333 DRDEASPYAAMLAAQDV 283
+ +P M AA V
Sbjct: 125 EGAAPAPSPRMHAAHSV 141
>SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4)
Length = 433
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -1
Query: 510 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 334
NK+ K +TLG + ET AH A N HVT+ GRE ++ KV A
Sbjct: 329 NKLQKATDSMTLGANAISTETKPVGAHNMAGGNPRVQHVTNPRIGREVRSKAFAPAKVYA 388
Query: 333 DRDEASPYAAM 301
+ +P + M
Sbjct: 389 EGAAPAPSSRM 399
>SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4)
Length = 352
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -1
Query: 510 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLS-GRETIARVTGGMKVKA 334
NK+ K +TLG + ET AH A + HVTD RE ++ + KV A
Sbjct: 239 NKLQKATDTMTLGANAINTETKPVGAHNMAGGHPRVQHVTDPGIDREVRSKASAPAKVHA 298
Query: 333 DRDEASPYAAMLAAQDV 283
+ +P M AA +
Sbjct: 299 EGAAPAPSPRMHAAHSM 315
>SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1105
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +2
Query: 182 CRLSTRTRGLCFVSTSSTELYVQGLMPRVLHFSATSCAANIAA*GDASSRSAFTFMPPVT 361
CR++ R LC + + E+ +G+M F A + +A S ++ FM
Sbjct: 1000 CRINARLVVLCCCHSGTGEIRAEGVMGLTRAFLAAGARSVLATLWQISDKATLYFMKRFY 1059
Query: 362 RAIVS 376
R +VS
Sbjct: 1060 RHLVS 1064
>SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)
Length = 230
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -1
Query: 438 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRD 325
+ +I +FND + DLSG+ETI ++ K++ +RD
Sbjct: 154 IIYIEDTFNDLLRTLRDLSGKETIVLIS--CKIRYERD 189
>SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -1
Query: 510 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 334
NK+ K +TLG + ET AH A + HVTD RE ++ KV A
Sbjct: 349 NKLQKATDSMTLGANAINTETKPLGAHNMAGGHPRVQHVTDPRIDREVRSKAFAPAKVHA 408
Query: 333 DRDEASPYAAMLAAQDV 283
+ +P + M AA +
Sbjct: 409 EGAAPAPSSRMHAAHSM 425
>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = -1
Query: 510 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKAD 331
NK+ K +TLG + ET AH A + HVTD ++ + KV A+
Sbjct: 368 NKLQKATNSMTLGANAINTETKPVGAHNMAGGHPRVQHVTDRVPSRRQSKDSAPAKVHAE 427
Query: 330 RDEASPYAAMLAAQ 289
A+P A ++ +
Sbjct: 428 GAAAAPAAHSMSGE 441
>SB_7970| Best HMM Match : RCC1 (HMM E-Value=0)
Length = 651
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -1
Query: 534 RLSHGPEKNKVAKEEVQVTLGPQHLVGETVFGVAHIFA 421
RL HG E++++ ++V+ +GP H+V + G AH A
Sbjct: 471 RLGHGDEQDQLLPKKVEAFVGP-HVVAVSA-GAAHSLA 506
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,675,359
Number of Sequences: 59808
Number of extensions: 466193
Number of successful extensions: 1109
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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