Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30034
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   4.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.4  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   8.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   8.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 317 DASSRSAFTFMPPVTRAIVSRPDKSVT 397
           +A  R  FT+   + ++I+  PDK +T
Sbjct: 500 NADVRPPFTYASLIRQSIIESPDKQLT 526


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 611 YRRKFKKGQEE 643
           YRR FKK QEE
Sbjct: 259 YRRNFKKMQEE 269


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 173 SCSFKYEDWPH 141
           SC+ K+E +PH
Sbjct: 131 SCAMKFESYPH 141


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 450 TVFGVAHIFASFNDTFVHVTDLSGRETI 367
           ++F +  IF   N+T   VTD    ET+
Sbjct: 12  SIFLILIIFIYSNETIAQVTDDENCETL 39


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 450 TVFGVAHIFASFNDTFVHVTDLSGRETI 367
           ++F +  IF   N+T   VTD    ET+
Sbjct: 12  SIFLILIIFIYSNETIAQVTDDENCETL 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,206
Number of Sequences: 438
Number of extensions: 3968
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)