Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30033
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)       90   2e-18
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)                    29   3.4  
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)                 29   4.4  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   7.7  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 41/56 (73%), Positives = 46/56 (82%)
 Frame = +1

Query: 493 GIPQLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 660
           G P LKSVREL+YKRG+ K+  QR+ +T NSIVEK L KH IICVEDLIHEIFTVG
Sbjct: 140 GYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGIICVEDLIHEIFTVG 195



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 36/45 (80%), Positives = 41/45 (91%)
 Frame = +2

Query: 377 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPNLR 511
           +VRK+LQL RLRQINNGVFVRLNKAT NML I +PYIA+GYPNL+
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLK 145



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 30/49 (61%), Positives = 36/49 (73%)
 Frame = +3

Query: 258 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 404
           KE DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSPK  K    L
Sbjct: 61  KEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLL 109



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 24/61 (39%), Positives = 35/61 (57%)
 Frame = +1

Query: 85  EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRSRN 264
           +D  K+P VPE++LK             +  L ++     K++EIFKRAE+YVKEYR + 
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 265 V 267
           V
Sbjct: 63  V 63


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 283 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 420
           PDK A+  TTT P   +   ++     T + R P  S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408


>SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)
          Length = 743

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -2

Query: 650 KISWMRSSTQIMLCLWSL-FSTMLLEVIGIRCPLSLANPRLYTNSRTLLSWGIPKQ 486
           KI + + +T    CLW       L ++ GI+ PL +A PR+   ++ LL  G+P+Q
Sbjct: 376 KIKFFKKATG---CLWPPEILKELGDIFGIKDPLKVATPRVLRRNQKLL--GMPEQ 426


>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
          Length = 1413

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 480 GSAILSIFTVALFRRTNTPLFIWRSLNSCRTLRTSVKLG*YH 355
           G   L +  VAL + T T  F W  +  C   R  VK+  YH
Sbjct: 646 GHKTLCLVVVALVQFTYTASFCWMLVEGCYLYRVIVKVFNYH 687


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 258 KERDEIRLARQARNRGNYYVP 320
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,035,819
Number of Sequences: 59808
Number of extensions: 378418
Number of successful extensions: 819
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)