Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30033
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    79   4e-15
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    31   0.72 
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      29   2.9  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    29   2.9  
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 34/56 (60%), Positives = 44/56 (78%)
 Frame = +1

Query: 493 GIPQLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 660
           G P  K++ +L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+EDL HEI TVG
Sbjct: 139 GYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVG 194



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 31/41 (75%), Positives = 36/41 (87%)
 Frame = +2

Query: 383 RKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN 505
           RK LQ+ RLRQINNGVFV+LNKAT+ +L I EPY+AWGYPN
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPN 142



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 23/43 (53%), Positives = 34/43 (79%)
 Frame = +3

Query: 261 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 389
           +++ +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK  K
Sbjct: 61  QKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 22/56 (39%), Positives = 32/56 (57%)
 Frame = +1

Query: 91  SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRS 258
           +KK+P VPE+VLK             Q  +   +   +KK + FKRAE+YV+EYR+
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRN 59


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 499 VSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNFTDFGE 371
           ++PS  RL    H H+ L Q +++ I    Q K++Q F   GE
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFFVVCGE 538


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 311  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 445
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 311  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 445
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 311  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 445
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -2

Query: 623 QIMLCLWSL-FSTMLLEVIGIRCPLSLANPRLYTNSRTLLSWGIPKQCKARRYLAYSQ*P 447
           +I++CL +L F T+  E   +   L +    +YTNS+    +       A  +L+ +   
Sbjct: 417 RIVICLVALSFDTLSPEARVVIVGLGMLGNEMYTNSKASCLFEQQMAAGAAWFLSEANVE 476

Query: 446 YSDVQTHHCLFGAV*TVAELYG 381
           Y  ++ H  LF  +  + EL+G
Sbjct: 477 YLSIKAHEVLF-HLPEINELFG 497


>Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical
           protein T08G3.8 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = -2

Query: 251 YSLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPLT 72
           YS+     L+K+S +FL  + + +S   + ++ R  ++++ ++        FL+   PLT
Sbjct: 24  YSMPTVYILIKLSYYFLYRKNKCYSTDLHPVLFRQFMIMQ-IACFFNVCIKFLIFRIPLT 82

Query: 71  G 69
           G
Sbjct: 83  G 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,972,800
Number of Sequences: 27780
Number of extensions: 284355
Number of successful extensions: 735
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)