Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30032
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    54   3e-08
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.1  
SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ...    27   2.8  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   4.9  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   6.5  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 26/32 (81%), Positives = 28/32 (87%)
 Frame = +1

Query: 1   VMSQANVSRAKAVRALKNNQSDIVNAIMELTM 96
           VM+QANVSRAKAV ALK N SD+VNAIM LTM
Sbjct: 142 VMAQANVSRAKAVTALKENNSDVVNAIMSLTM 173


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 647 LPTKKRKIGHSPIKTITSTTRGVYLVVNTLPYPSFIGLK 531
           +P K R    SP++T TS+++   +V ++ P P  I  K
Sbjct: 226 VPNKNRSSTFSPLRTPTSSSKTFVIVDHSTPSPPSIRTK 264


>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 450 DYHSRSLFCYILNSRNGNGKLLKNELF 530
           DYHS  L  Y  NS   N  L++ E+F
Sbjct: 24  DYHSDGLARYANNSNYRNDSLIRKEMF 50


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 644 PTKKRKIGHSPIKTITSTTRGVYLVVN 564
           PT  R I HS + T  S T GV   VN
Sbjct: 261 PTNSRSISHSSLYTKQSGTAGVLPAVN 287


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 522 HFSTIFRFRFVNLKYNKTSFLNDSQI 445
           H S +FRFRF  L + K+    +S++
Sbjct: 254 HISLVFRFRFSPLIFRKSKNATESRV 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,934
Number of Sequences: 5004
Number of extensions: 55054
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)